YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13487715
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	99	0.87
Transmembrane Helix	100	117	0.54
Non-Cytoplasmic	118	137	0.60
Transmembrane Helix	138	164	0.66
Cytoplasmic	165	179	0.71
Transmembrane Helix	180	201	0.86
Non-Cytoplasmic	202	205	0.58
Transmembrane Helix	206	228	0.76
Cytoplasmic	229	240	0.53
Transmembrane Helix	241	255	0.28
Non-Cytoplasmic	256	256	0.40
Transmembrane Helix	257	280	0.84
Cytoplasmic	281	285	0.64
Transmembrane Helix	286	310	0.88
Non-Cytoplasmic	311	342	0.65
Transmembrane Helix	343	367	0.83
Cytoplasmic	368	378	0.65
Transmembrane Helix	379	401	0.83
Non-Cytoplasmic	402	408	0.52
Transmembrane Helix	409	432	0.81
Cytoplasmic	433	441	0.44
Transmembrane Helix	442	463	0.87
Non-Cytoplasmic	464	475	0.54
Transmembrane Helix	476	500	0.85
Cytoplasmic	501	657	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHRVNDNPE NMATDISRVA SSRRYSENGL PYVHKVGVPP KTNLLKEITE TVKETFFHDD  60
   61 PLRNFKDQSK SKKLLLGIQA VFPILEWGRS YNFSKFKGDL IAGLTIATLC IPQDIGYAKL 120
  121 ANLDAQFGLY SSFVPPLVYA FMGSSRDIAI GPVAVVSLLL GSMLQQELDP VKQKHEYQRL 180
  181 AFTATFFAGV TQFVLGFFRL GFLIDFLSHA AIVGFMGGAA ITISLQQLKG LLGIKKFTKK 240
  241 TDIVSVMKSV FAAAHHGWNW QTIVIGLSFL AFLLVAKFIG KKNKKYFWVP AIAPLISVIL 300
  301 STFFVFIFHA EKHDVQIVRH IDQGINPPSV NEIYFSGEYL TKGFRIGVIA GLIALTEAVA 360
  361 IGRTFAAMKD YSLDGNKEMV ALGTMNIVGS MTSCYVATGS FSRSAVNYMA GCQTAVSNIV 420
  421 MSCVVLLTLE LITPLFKYTP NAILASIIIS AVIGLIDIDA MTLLYKIDKF DFVACMGAFL 480
  481 GVVFQSVEIG LLIAVAISFA KILLQVTRPR IVVLGKVPRT RVYRNMQQYP ESTKVPGVLI 540
  541 VRVDSAIYFS NSNYMRDRIL RWLTDEDEML KETNQQKIQY LIVEMPPVTD IDTSGIHSLE 600
  601 DLYKSLQKRN VELVLANPGT MVIDKLHASG FADMIGEDKI FLTVADAVMT FAPKMEP