YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41582207
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.94
Transmembrane Helix	8	29	0.93
Cytoplasmic	30	39	0.81
Transmembrane Helix	40	63	0.87
Non-Cytoplasmic	64	87	0.94
Transmembrane Helix	88	110	0.90
Cytoplasmic	111	119	0.88
Transmembrane Helix	120	140	0.93
Non-Cytoplasmic	141	146	0.80
Transmembrane Helix	147	167	0.94
Cytoplasmic	168	178	0.90
Transmembrane Helix	179	201	0.87
Non-Cytoplasmic	202	220	0.93
Transmembrane Helix	221	242	0.90
Cytoplasmic	243	259	0.88
Transmembrane Helix	260	281	0.89
Non-Cytoplasmic	282	288	0.70
Transmembrane Helix	289	311	0.90
Cytoplasmic	312	324	0.76
Transmembrane Helix	325	343	0.85
Non-Cytoplasmic	344	353	0.67
Transmembrane Helix	354	374	0.88
Cytoplasmic	375	392	0.90
Transmembrane Helix	393	415	0.86
Non-Cytoplasmic	416	425	0.86
Transmembrane Helix	426	449	0.84
Cytoplasmic	450	547	0.94
Transmembrane Helix	548	569	0.92
Non-Cytoplasmic	570	603	0.90
Transmembrane Helix	604	622	0.95
Cytoplasmic	623	693	0.88
Transmembrane Helix	694	710	0.54
Non-Cytoplasmic	711	720	0.37
Transmembrane Helix	721	740	0.93
Cytoplasmic	741	741	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQTYQYAWI IPFLPLPVPM LIGLGLLLFP TATKSLRRMW AFQSVLLLSI VMIFSMNLSI  60
   61 QQINSSSVYQ YVWSWIINND FSLEFGYLID PLTSIMSILI TTVGIMVLIY SDNYMSHDHG 120
  121 YLRFFAYMSF FSTSMLGLVT SSNLIQIYIF WELVGMCSYL LIGFWFTRPV AAKACQKAFV 180
  181 TNRVGDFGLL LGILGFYWIT GSFEFRDLFQ IFNNLISNNE VNFVFVTLCA VLLFAGAIAK 240
  241 SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL MPLFIVIPHI MNFISLIGII 300
  301 TVFFGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS 360
  361 GSVIHSMETL VGYCPKKSQN MVLMGGLTKH VPITKNSFLL GTLSLCGIPP LACFWSKDEI 420
  421 LNDSWLYSPI FAIIAWSTAG LTAFYMCRIY LLTFEGHLNV HFQNYSGKRN TPLYSISLWG 480
  481 KEGSKKSNKN FRLVSLLKMK KNGRPSFFSN KVYKMDENVR NRIQPFLSIP NFGNTKTSLY 540
  541 PYESDNTMLF PILILILFTL FVGFLGIPFN QDVDILSKWL TPSINLLHQN SNNSIDWYEF 600
  601 CKDAVFSVSI ASFGIFIAFF LYKPVYSSFQ NLDLINSFVK IGPKRIFSDK IKNAIYDWSY 660
  661 NRGYIDAFYG TFFTVGVRKL AEFTHFFDRR IIDGIPNGVG FMSFFVAEVI KSVGGGRVSS 720
  721 YLFFYFSYVS IFLLIYYFLN L