YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41582055
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.94
Transmembrane Helix	8	29	0.93
Cytoplasmic	30	39	0.81
Transmembrane Helix	40	63	0.87
Non-Cytoplasmic	64	87	0.94
Transmembrane Helix	88	110	0.90
Cytoplasmic	111	119	0.89
Transmembrane Helix	120	140	0.92
Non-Cytoplasmic	141	146	0.80
Transmembrane Helix	147	167	0.93
Cytoplasmic	168	178	0.89
Transmembrane Helix	179	201	0.87
Non-Cytoplasmic	202	220	0.93
Transmembrane Helix	221	242	0.90
Cytoplasmic	243	259	0.88
Transmembrane Helix	260	281	0.90
Non-Cytoplasmic	282	288	0.72
Transmembrane Helix	289	311	0.90
Cytoplasmic	312	322	0.81
Transmembrane Helix	323	343	0.82
Non-Cytoplasmic	344	353	0.68
Transmembrane Helix	354	374	0.89
Cytoplasmic	375	392	0.90
Transmembrane Helix	393	415	0.87
Non-Cytoplasmic	416	425	0.87
Transmembrane Helix	426	449	0.84
Cytoplasmic	450	545	0.94
Transmembrane Helix	546	567	0.92
Non-Cytoplasmic	568	601	0.91
Transmembrane Helix	602	620	0.95
Cytoplasmic	621	715	0.78
Transmembrane Helix	716	737	0.88
Non-Cytoplasmic	738	739	0.41

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQTYQYAWI IPFLPLPVPM LIGLGLLLFP TATKSLRRMW AFQSVLLLSI VMIFSMNLSI  60
   61 QQINSSSVYQ YVWSWIINND FSLEFGYLID PLTSIMSILI TTVGIMVLIY SDNYMSHDRG 120
  121 YLRFFAYMSF FSTSMLGLVT SSNLIQIYIF WELVGMCSYL LIGFWFTRPV AAKACQKAFV 180
  181 TNRVGDFGLL LGILGFYWIT GSFEFRDLFQ IFNNFISNNE VNFLFVTLCA VLLFAGAIAK 240
  241 SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL MPLFIGIPHI MNLISLIGII 300
  301 TVFFGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS 360
  361 GSVIHSMETL VGYCPKKSQN MVLMGGLTKH VPITKNAFLL GTLSLCGIPP LACFWSKDEI 420
  421 LNDSWLYSPI FAIIAWSTAG LTAFYMCRIY LLTFEGHLNV HFQNYSGKRN TPLYSISLWG 480
  481 KEGSKRSKKF FRLVTLLKMK KNRRPSSNKI YKRDYNVIKR IQPFLSIPNF GNTKTSLYPY 540
  541 ESDNTMLFPI LILILFTLFV GFLGIPFNQD VDILSKWLTP SINLLHKNSN NSIDWYEFCK 600
  601 DAVFSVSIAS FGIFIAFFLY KPVYSSFQNL DLINSFVKMG PKRSFSDKIK NAIYDWSYNR 660
  661 GYIDTFYGTF LTVGVRKLAE FTHFFDRRII DGIPNGVGFI SFFVAEVIKS VGGGRISSYL 720
  721 FFYFSYVSIF VLIYYFLNL