YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1439528
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAIQIILLM VVAAITGIGS VLDEAQTHRP LVACTLVGLI LGDLQTGIIL GGTLEMMALG  60
   61 WMNVGLAMAP DTAIASVIST ILVITAHQGL GEGIAIAVPL AAAGQALTIF VRTITVFFVH 120
  121 KADDYAKNGN FKGIERMHIL ALVFQALRVM IPTLIICLIS ASAVSHFLNG IPEVITGGLQ 180
  181 IGGGIIVVVG YAMVINMMDV PYLKPFFYMG FLFAAFTNFN LVGFGGLGLC LALLFIQLKY 240
  241 RSEGATPQPQ VAAESNNDGI DDDLDDDLDD

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.43
Transmembrane Helix	6	23	0.88
Cytoplasmic	24	30	0.50
Transmembrane Helix	31	54	0.82
Non-Cytoplasmic	55	63	0.45
Transmembrane Helix	64	86	0.83
Cytoplasmic	87	92	0.44
Transmembrane Helix	93	116	0.80
Non-Cytoplasmic	117	143	0.52
Transmembrane Helix	144	168	0.82
Cytoplasmic	169	173	0.49
Transmembrane Helix	174	195	0.88
Non-Cytoplasmic	196	210	0.50
Transmembrane Helix	211	236	0.86
Cytoplasmic	237	270	0.58