YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HACD3_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METQVLTPHV YWAQRHRELY LRVELSDVQN PAISITDNVL HFKAQGHGAK GDNVYEFHLE  60
   61 FLDLVKPEPA YRLTQRQVNI TVQKKGSHWW ERLTKQEKRP LFLAPDFDRW LDESDAEMEL 120
  121 RAKEEERLNK LRLEREGSPE TLTNLKKGYL FMYNLVQLLG FSWIFVNLTV RFFILGKESF 180
  181 YDTFHNVADM MYFCQMLALV ETLNAAIGVT STPVLPALIQ FLGRNFILFL VFGTMEEMQN 240
  241 KAVVFFVFYS WSAIEIFRYP FYMLSCIDMD WKVLTWLRYT MWIPLYPLGC LSEAVAVIQS 300
  301 IPVFNESGRF SFTLPYPVKM KVRFSFFLQV YLVMLFLGLY INFRHLYKQR RRRYGQKKKK 360
  361 LH

Type	Start	End	Confidence
Cytoplasmic	1	150	0.83
Transmembrane Helix	151	175	0.78
Non-Cytoplasmic	176	190	0.68
Transmembrane Helix	191	212	0.62
Cytoplasmic	213	213	0.31
Transmembrane Helix	214	235	0.58
Non-Cytoplasmic	236	241	0.59
Transmembrane Helix	242	262	0.75
Cytoplasmic	263	281	0.75
Transmembrane Helix	282	303	0.84
Non-Cytoplasmic	304	323	0.89
Transmembrane Helix	324	343	0.95
Cytoplasmic	344	362	0.87