YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49523517
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.76
Transmembrane Helix	6	24	0.81
Cytoplasmic	25	30	0.85
Transmembrane Helix	31	54	0.86
Non-Cytoplasmic	55	79	0.92
Transmembrane Helix	80	101	0.91
Cytoplasmic	102	110	0.89
Transmembrane Helix	111	131	0.92
Non-Cytoplasmic	132	137	0.81
Transmembrane Helix	138	158	0.94
Cytoplasmic	159	169	0.93
Transmembrane Helix	170	192	0.87
Non-Cytoplasmic	193	211	0.93
Transmembrane Helix	212	233	0.87
Cytoplasmic	234	250	0.83
Transmembrane Helix	251	272	0.90
Non-Cytoplasmic	273	279	0.68
Transmembrane Helix	280	302	0.90
Cytoplasmic	303	313	0.79
Transmembrane Helix	314	334	0.82
Non-Cytoplasmic	335	344	0.64
Transmembrane Helix	345	364	0.85
Cytoplasmic	365	383	0.85
Transmembrane Helix	384	405	0.89
Non-Cytoplasmic	406	416	0.83
Transmembrane Helix	417	440	0.85
Cytoplasmic	441	537	0.92
Transmembrane Helix	538	559	0.91
Non-Cytoplasmic	560	596	0.90
Transmembrane Helix	597	615	0.94
Cytoplasmic	616	682	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IIPFVPLPVP MLIGVGLLLF PTATKNLRRM WAFPSILLLS IVMIFSTNLS IQQINSSSIY  60
   61 QYVWSWTLDN DFSLEFGYLI DPLTSIMLML ITTVGIMVLI YSDNYMAHDQ GYLRFFAYMS 120
  121 FFSTSMLGLV TSSNLIQIYI FWELVGMCSY LLIGFWFTRP PAANACQKAF VTNRVGDFGL 180
  181 LLGILGFYWI TGSFEFRDLF EIFNNFIYNN EVNSPFVTLC AALLFAGAVA KSAQFPLHVW 240
  241 LPDAMEGPTP ISALIHAATM VAAGIFLVAR LLPLFIVIPY IMNLISLIGI ITVLLGATLA 300
  301 LAQKDIKRGL AYSTMSQLGY MMLALGMGSY RSALFHLITH AYSKALLFLG SGSVIHSMET 360
  361 IVGYSPDKSQ NMVLMGGLTK HVPITKTSFL LGTLSLCGIP PLACFWSKDE ILNDSWLYSP 420
  421 IFAIIAWSTA GLTAFYMFRI YLLTFEGHLN VHFQNYSGNK NTPFYSISLW GKGCSERINK 480
  481 NLRLLRMNNN ESSSFFSKKT YRSDENVRKR NRGRPFINIV HFDNKKPYSY PYESDNTMLF 540
  541 PLLVLVLFTL FVGSLGISFN QEGTDLDILS KWLVPSINLL HQKSKDSTDW YEFWKDAIFS 600
  601 VSIAYFGIFL ASFLYKPIYS SFKNFDLINL FVKTGPKRSR WDKILNGLYD WSYNRAYMDS 660
  661 FYTTSFTGAI RGLAQLTHFF DR