YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40890055
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLKPVLKKF VSLVRAFLTF LFALLVLGVM LWAYIDGFQI ATSPFGIISF GFYGVLLSLH  60
   61 VLIQSFFAFV EHGRMNARRK PCSYTKTIGF TISAYQEDPA YLRECLQSVR ALQYPSELLR 120
  121 IVMVVDGNSE DDRYMLEMFR EVFADQDPGC YIWQNNYHSW NPNGQDQGAA EGPDADYEVL 180
  181 FEDPQRLEVE EIIRTKKCVC IMQKWGGKRE VMYTAFKALG SSADFIQVCD SDTKLDPLAT 240
  241 VELCKVLESN QKYGAVGGDV MILNLKDSYI SFMSSLRYWM AFNIERSCQS FFDCVSCISG 300
  301 PLGLYRNDLL QQFLESWYNQ KFLGTHCTFG DDRHLTNRML SMGYATKYTA LSKCYTETPA 360
  361 QFLRWLNQQT RWTKSYFREW LYNAMWWHKH HLWMTYESIV SGIFPFFVTA TIIKLFWTGT 420
  421 LWDILWVLCS IQLIGLIKAG YACLLRQDIV MLFMSLYS

Type	Start	End	Confidence
Cytoplasmic	1	12	0.94
Transmembrane Helix	13	35	0.91
Non-Cytoplasmic	36	46	0.85
Transmembrane Helix	47	70	0.90
Cytoplasmic	71	392	0.99
Transmembrane Helix	393	416	0.88
Non-Cytoplasmic	417	423	0.76
Transmembrane Helix	424	445	0.91
Cytoplasmic	446	458	0.95