YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1016748
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERPALLQNG EIGTMESPTT RLASKPFPKP FSIESLIANQ TPATATPPSP PEERDQEQEA  60
   61 EQEQELSARA MVASSALGLT QFPLYNPWLH GYFAQNHERL THLIAGACYL PSSPAGHPAA 120
  121 QQPQAQAQPQ PPPPHPPTHA LEKQLPPTLP HPLDTRFLPF NPAAAGVAPT DLSYRRLAEL 180
  181 MNQDYVHSLS VHARLQHMAA AGRMHEDQAN PGMAQLQEPT PPQAHSSPAK SGSHSPMEPA 240
  241 LDVGMDEDFE CSGDSCSDIS LTMSPRNYNG EMDKSRNGAY TNSDSEDCSD DEGAQSRHEG 300
  301 GGMGGKDSQG NGSSSNSKSR RRRTAFTSEQ LLELEREFHA KKYLSLTERS QIATSLKLSE 360
  361 VQVKIWFQNR RAKWKRVKAG LTSHGLGRNG TTSGTKIVVP IPVHVNRFAV RSQHQQLEKM 420
  421 CLSGPKPDLR KKLSAEAIGG FEKFSGSTNA SSPSGGPVGL GVGVGVGVGV GLGVSTPLSL 480
  481 PRSIY

Type	Start	End	Confidence
Non-Cytoplasmic	1	454	0.95
Transmembrane Helix	455	478	0.78
Cytoplasmic	479	485	0.74