YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41079313
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.98
Transmembrane Helix	54	73	0.82
Non-Cytoplasmic	74	104	0.81
Transmembrane Helix	105	124	0.82
Cytoplasmic	125	139	0.79
Transmembrane Helix	140	161	0.91
Non-Cytoplasmic	162	190	0.66
Transmembrane Helix	191	213	0.90
Cytoplasmic	214	223	0.75
Transmembrane Helix	224	239	0.79
Non-Cytoplasmic	240	244	0.61
Transmembrane Helix	245	264	0.90
Cytoplasmic	265	281	0.93
Transmembrane Helix	282	301	0.96
Non-Cytoplasmic	302	600	0.98
Transmembrane Helix	601	619	0.96
Cytoplasmic	620	638	0.87
Transmembrane Helix	639	657	0.94
Non-Cytoplasmic	658	668	0.73
Transmembrane Helix	669	689	0.91
Cytoplasmic	690	722	0.93
Transmembrane Helix	723	745	0.91
Non-Cytoplasmic	746	773	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSPTPQGS LRQRNVASKQ APVESAFVPE VELDKLSKAA LSSRRNIQRG ELEHKLALTL  60
   61 VTILGFVTRF WGISHPDEVV FDEVHFGKFA SYYLQRTYFF DVHPPFAKLL FAFVGWLVGY 120
  121 DGHFHFDNIG DSYVANKAPY VAFRALPAFL GALTVSVTYL IMWESGYSVP ACLVATGLIL 180
  181 LDNAHIGQTR LILLDATLVL AMACSLLFYI KFYKLRHEPF SRKWWKWLIL TGFALSCDIS 240
  241 TKYVGLFAFV TIGSAVIIDL WDLLDIKRRY GAISMPEFGK HFAARAFGLI ILPFLFYLFW 300
  301 FQVHFSVLTR SGPGDDFMTP EFQETLSDNV MLASAVDIQY YDTITIRHKE TKAYLHSHTD 360
  361 TYPLRYDDGR ISSQGQQVTG YPHNDTNNYW QILPADNDQK LGRNVKNQDL VRLRHIVTDK 420
  421 ILLSHDVASP YYPTNQEFTC VTPEEAFGER QNDTLFEIRI EGGKTGQDFK TVASHFKLIH 480
  481 FPSKVAMWTH TTPLPEWAYR QQEINGNKQI TPSSNVWIAE DIPSLPEDDA RRHKEQRKVK 540
  541 SLPFLRKWFE LQRSMFYHNN KLTSSHPYSS QPYHWPFLLR GVSFWTQNDT RQQIYFVGNP 600
  601 IGWWLASSLL AVFAGIIGAD QVSLRRGIDA LDHRTRSRLY NSTGFFFLAW ATHYFPFFLM 660
  661 GRQLFLHHYL PAHLASCLVT GSLVEFIFNT DPADEEPSRS KNPKATGPRR HITARERFAG 720
  721 KSMAGAWIAC FVILAAAAAS WYFFLPLTYG YPGLSVEEVL RRKWLGYDLH FAK