YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RMA1_CAPAN
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQDMALEQL DTTFNKHDTP LGKWKSMNDE VEENISGGFD CNICLDCVHE PVITLCGHLY  60
   61 CWPCIYKWIY FQSVSSENSD QQQPQCPVCK AEVSEKTLIP LYGRGGQSTK PSEGKAPNLG 120
  121 IVIPQRPPSP RCGGHFLLPT TDSNPSQLLQ RRGYQQQSQT RQPAYQGSYM SSPMLSPGGA 180
  181 TANMLQHSMI GEVAYARIFG NSSTTMYTYP NSYNLAISSS PRMRRQLSQA DRSLGRICFF 240
  241 LFCCFVTCLI LF

Type	Start	End	Confidence
Cytoplasmic	1	231	0.80
Transmembrane Helix	232	251	0.90
Non-Cytoplasmic	252	252	0.91