YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6942149
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVLLLYVCTV SCLASSKVIL MRNNITLSFD DIEANIAPSV KGTGEIGVVY VAEXLDACQN  60
   61 LMNKXEQSSN ETSPFVLIVR GGCSFEEKVR KAQRAGFKAA IIYDNEDRGT LIAMAGNSGG 120
  121 IRIHAVFVTK ETGEVLKEYA GFPDTKVWLI PSFENSAWSI MAVSFISLLA MSAVLATCFF 180
  181 VRRHRIRRRT SRSSRVREFH GMSRRLVKAM PSLIFSSFHE DNTTAFTCAI CLEDYTVGDK 240
  241 LRLLPCCHKF HAACVDSWLT SWRTFCPVCK RDARTSTGEP PASESTPLLS SAASSFTSSS 300
  301 LHSSVRSSAL LIGPSLGSLP TSISFSPAYA SSSYIRQSFQ SSSNRRSPPI SVSRSSVDLR 360
  361 QQAASPSPSP SQRSYISHMA SPQSLGYPTI SPFNTRYMSP YRPSPSNASP AMAGSSNYPL 420
  421 NPLRYSESAG TFSPYASANS LPDC

Type	Start	End	Confidence
Non-Cytoplasmic	1	157	0.89
Transmembrane Helix	158	181	0.94
Cytoplasmic	182	309	0.95
Transmembrane Helix	310	330	0.74
Non-Cytoplasmic	331	444	0.79