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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|945050
Protein type: Globular with Signal Peptide
Type Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENATTTTAK HYKTAGKQYK TNKVNNTRRA TAAAAAAATT TVTTAATPTK KRTYRETATA  60
   61 TTVTQRSTNK ANIAAAIALA AATEATASAS ASATATATDA TLTASKAAAT AAATTDAASG 120
  121 NSNSSSKPST STRDKLGEVP LPTVDSNHII SNNNNNNNNN NTSNNNNNNH HSDNSISENN 180
  181 YEFKSRDKAS LSDSKMTLQQ MAAVSSNQEP VAPNVANTMS NSSIINSQQT TVNATPATDE 240
  241 APLGDRSNIS RYLHKKFKRL ASTTEVDSWS ATNGGGALQA SGDAVRTTSL SSNSSLSPPP 300
  301 TTPLANGHHL MTQQQSHQQV QQQQQQQTPP PSVAIHEFSA NFVNSNHVNA IGHEESIISN 360
  361 SGYKAAGRTR TPLANSNSNT NSTSNSNSNH AANATLSPAS FAQHQQLTQP TTVSPGIPGG 420
  421 AAAPNPACEK SGRYVCQYCN LICAKPSVLE KHIRAHTNER PYPCDTCGIA FKTKSNLYKH 480
  481 CRSRSHAARA RGLEVPADAD DGLSDQDAEL SNSSSELPSR AGSPYEEPIN SPTPSPSTLS 540
  541 AAKSAYIQQP PLPTYMQQLP LGSPAAGTLP PTTADNHHSA TAQHRQSIDY KPYKPKFHNA 600
  601 SMYSCSSKEL QQQQQQLQIQ QQQQQHQLAQ QKLSIQLPLV QQPSLAHPTL SPSTQMKMKH 660
  661 HINSHQIQLQ LQQQQSLLAQ QSLLAAMPPG GVYYLGQPSY YNQDTAAAIH QHALAIQQFQ 720
  721 IHLAQQQQQQ QQQHPPLVKA TPPMQQPPSL PPQQLVRANS QISSVATAPA TPTPAANLST 780
  781 FASSSGGKQV NVAKVQEHIS KLISQNEAIV ENKEILLQKK YPKQLSRSRS FNNANSNNAS 840
  841 QHGSNASALH ANNSHNNTNA QMPERETKVN LAQAIFQKQQ HQLQQQQQQQ ITQQQQQQLE 900
  901 QQNYYTYIQQ QQECQQQQLE PPNGVVKRNA YKPGVVMTTP VKQQQQLPPP PSPLPMQTMQ 960
  961 YRQDPATPVT KIEQPTTAVP VMPLNLSAKP KPTLVTVPVS SLSTSSLAPT PTTSTNPTSS1020
 1021 SKTAPPPAQV NNSIIKNLLL NARGLAVPIG EGDDAVYSCP ICASEFRSAD DLKLHNSTYC1080
 1081 QDASSSAPMS PASSPFRSNS ISLSLPELKS HMANSKNPLS LAKLAWSQLK TKRSSLVLSR1140
 1141 LSAAQTPART STVTAPTVTA SAPAPAVATV TAPSSAPAPQ IEALRFVDAP LPSPGPLLGK1200
 1201 TPLVDYAQQS TPRKAQDSVV ITKMHEDRQF VIEAQPAKRI KTSDLVVASS SQQPTSFNFS1260
 1261 FNNQNSSNSV PELQSSKEER LRRFTSSGGS MIPISECPDL DNSPKMIRTP LLSGGSFQDV1320
 1321 SVKVNNETGS SSKERKLMAL VSGSGLLGVS SGPQHFQFPP INSITAFNPL TLPPMSGGDK1380
 1381 TTPVTPIPHV PGMPGPGSLT PQMPLLPPPP QQLQLPIPSS RGRSPNRKQP SPLLLGGGSG1440
 1441 ELKALSPFGG VQNVPSEFSR QPPTPAQRQA LQWNSKETPK KAPFNFLRMA DNVKTTEPEV1500
 1501 RHFNLENVIS GKQQELPLTP LHVDTPNGNA PEETSPVASA SASAKSKFLR PTSLPLKPGT1560
 1561 FTPKRHHGIT PTANTLPLIS PETPRPSKSC VQLYLNGHAY TYLGLKCSTK MFYCTVNCPQ1620
 1621 PSYVAGMHKL SMYSVWQVCE ENQPHPLGFK LKQVMALYDS RQRMLGNGSS TAMAGSGKLS1680
 1681 YNLVASQQIV SSPSTSSTSS AFYQGPLKTP PTVTIAALSE ANVAAKANEE AQAKKLETSP1740
 1741 SGQPLVGGYE SHEDYTYIRG RGRGRYVCSE CGIRCKKPSM LKKHIRTHTD VRPFTCSHCN1800
 1801 FSFKTKGNLT KHMQSKTHFK KCIELGINPG PMPPDSEFLD VDMDFDQQSS TSAGGRTSSM1860
 1861 AGESDSDDYS DNESESSDTD ESKSRQKEHE AARGLLSLSM TPPIPQSVSP YPQLQDTPLP1920
 1921 AASPANSIGS SGSQPKRLVC SFTSPKPPFD YQKQEQYYSN PEESKPKRSV ANEESAPMDL1980
 1981 TKPRGSILLI SPSPVSVPAH DLPKSQAQQM HDVIFGTSGN ESGFMKTLIS VSDKVRISAE2040
 2041 MEEQAKHEAE GEDVQLQTYI KEHALHQAKI KQSQFSRSYL INTLYTAASP VMSSSSTLFT2100
 2101 ANSRPVMSVN EVPSIEVHEV KTPEAIESPR SAPEQAPVIL AQIAQEENEE PNIAEPHNAN2160
 2161 LPAAVQQPDV NEFTGVLGNP TAPPTSSVTA TSVSTTTAAP VAPSSTANST QPAQRTVIVG2220
 2221 EDGFKSSTPT SKIGDLQHVS YGRGVPPAPI AGDARPTCTM CSKTFQRQHQ LTLHMNIHYM2280
 2281 ERKFKCEPCS ISFRTQGHLQ KHERSEAHKN KVMMTSTFGV PTTSNPRPFE CTDCKIAFRI2340
 2341 HGHLAKHLRS KTHVQKLECL QKLPFGTYAE IERAGISLTE IDTSDCENSL ISLKLLAQKL2400
 2401 QEKDPGKLSS YTTPSGMMQL AQDAAGPVSQ DSASEDGFSA AIASAIASLD NDSAGNTPKR2460
 2461 ASSMSEDETV ANGLNHSLKR RLPGSFSSTG EESDNPPESS GEKRARSGQE LPLPVAVPVA2520
 2521 ASAAASN

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