YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48686501
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.53
Transmembrane Helix	12	26	0.28
Non-Cytoplasmic	27	82	0.58
Transmembrane Helix	83	100	0.48
Cytoplasmic	101	116	0.76
Transmembrane Helix	117	137	0.79
Non-Cytoplasmic	138	156	0.75
Transmembrane Helix	157	181	0.82
Cytoplasmic	182	190	0.81
Transmembrane Helix	191	212	0.91
Non-Cytoplasmic	213	249	0.75
Transmembrane Helix	250	270	0.84
Cytoplasmic	271	277	0.62
Transmembrane Helix	278	292	0.81
Non-Cytoplasmic	293	300	0.52
Transmembrane Helix	301	318	0.75
Cytoplasmic	319	325	0.56
Transmembrane Helix	326	344	0.93
Non-Cytoplasmic	345	351	0.67
Transmembrane Helix	352	374	0.89
Cytoplasmic	375	394	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSTEFKVAL GCVAARLAVT CLFPALQQQL DQSVEFSTPV TSFRSLQEGI YLLRNNIQVY  60
   61 NHGVVHHPPI LVFFLSLFDS DRLISIIYAS IDGLIAYQLT KMTKVFKNLK IQSWLPGLLY 120
  121 AVNPLVLLSC VSRSSIIFTN FAISSSLYCV LTEGNVILSS VMISVAGYLS FYPLLLLIPL 180
  181 LGMLKNWRQR MFAVTVSILS LLILLLFSYN MLGGESWSFL KQVYGSIISF QKVFPNLGLW 240
  241 WYFFIEMFDT FIPFFKAVFN IFIAAFITPF TLRYHKQPFY AFILCIGWIA LTKPYPSLGD 300
  301 AGFFFSFLPF FTPLFGYLRY PIISALLFLH AIVLAPIFYH LWVVLGSGNS NFFYAISLVY 360
  361 ALALASILVD LNWAMLRIEY DNGIPNFKLK VTQI