YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40950666
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.62
Transmembrane Helix	7	31	0.81
Non-Cytoplasmic	32	44	0.58
Transmembrane Helix	45	63	0.96
Cytoplasmic	64	80	0.56
Transmembrane Helix	81	101	0.86
Non-Cytoplasmic	102	119	0.55
Transmembrane Helix	120	144	0.79
Cytoplasmic	145	151	0.40
Transmembrane Helix	152	173	0.86
Non-Cytoplasmic	174	179	0.45
Transmembrane Helix	180	201	0.90
Cytoplasmic	202	208	0.46
Transmembrane Helix	209	225	0.35
Non-Cytoplasmic	226	316	0.71
Transmembrane Helix	317	340	0.83
Cytoplasmic	341	347	0.64
Transmembrane Helix	348	365	0.79
Non-Cytoplasmic	366	370	0.52
Transmembrane Helix	371	387	0.82
Cytoplasmic	388	396	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINLNPVAIL TLLYLSINFL SMLIGCSSGE IQVETSIFRV SEESLIYSFL LQAICLIFLY  60
   61 YIYKYFTNRI SYPPLTFKAK WGRALLIIQI AFIIFNTQMG VNTAGSVERI EGQSLSNYLF 120
  121 IILQPDILVA VISVCLNSGF LFWTNILVYL LSMFLRGWMG GTFVILFLIL SRYQNLRISL 180
  181 KTFLVSLCSL LLLFSILPAL IEAKWAMRTG ISLSVFISNM SSYVTPENYY AGINYLLNRF 240
  241 QHVGHLALIY ENADDIFKKY NAGYFSSYYM DGIPQYLLVK MYNLDMYKLS FYLVQYFFDI 300
  301 TEPTWNINTG VVGWLYILRY ESILFAFYIM LLLLVPYYVV SRFAGKRMLS VLACFSIIYL 360
  361 FHGWLGAYVN LAFYACIISL LANIRLYRTV YIPCEK