YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26337211
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHFDASLST YFKAFLGPRD TRVKGWFLLD NYIPTLVCSV IYLLIVWLGP KYMKNRQPFS  60
   61 CRGILQLYNL GLTLLSLYMF YELVTGVWEG KYNFFCQGTR SAGESDMKII RVLWWYYFSK 120
  121 LIEFMDTFFF ILRKNNHQIT VLHVYHHATM LNIWWFVMNW VPCGHSYFGA TLNSFIHVLM 180
  181 YSYYGLSSIP SMRPYLWWKK YITQGQLVQF VLTIIQTTCG VFWPCSFPLG WLFFQIGYMI 240
  241 SLIALFTNFY IQTYNKKGAS RRKDHLKGHQ NGSVAAVNGH TNSFPSLENS VKPRKQRKD

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.79
Transmembrane Helix	32	49	0.92
Cytoplasmic	50	63	0.72
Transmembrane Helix	64	85	0.81
Non-Cytoplasmic	86	112	0.82
Transmembrane Helix	113	132	0.67
Cytoplasmic	133	138	0.70
Transmembrane Helix	139	158	0.65
Non-Cytoplasmic	159	164	0.66
Transmembrane Helix	165	186	0.82
Cytoplasmic	187	204	0.77
Transmembrane Helix	205	225	0.89
Non-Cytoplasmic	226	231	0.76
Transmembrane Helix	232	252	0.93
Cytoplasmic	253	299	0.97