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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|40849900
Protein type: Globular with Signal Peptide
Type Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPSGSLFPS LVVVGHVVSL AAVWHWRKGH RQAQDEQDER DRVQKKTFTK WVNKHLIKAQ  60
   61 RHISDLYEDL RDGHNLISLL EVLSGDSLPR EKGRMRFHKL QNVQIALDYL RHRQVKLVNI 120
  121 RNDDIADGNP KLTLGLIWTI ILHFQISDIQ VSGQSEDMTA KEKLLLWSQR MVEGYQGLRC 180
  181 DNFTTSWRDG RLFNAIIHRH KPMLIDMNKV YRQTNLENLD QAFSVAERDL GVTRLLDPED 240
  241 VDVPQPDEKS IITYVSSLYD AMPRVPGAQD GVRANELQLR WQEYRELVLL LLQWIRHHTA 300
  301 AFEERKFPSS FEEIEILWCQ FLKFKETELP AKEADKNRSK GIYQSLEGAV QAGQLKIPPG 360
  361 YHPLDVEKEW GKLHVAILER EKQLRSEFER LECLQRIVSK LQMEAGLCEE QLNQADSLLQ 420
  421 SQDIRLLASG KAAQRAGEVE RDLDKADGMI RLLFNDVQTL KDGRHPQGEQ MYRRVYRLHE 480
  481 RLVAIRTEYN LRLKAGVGAP VTQVTLQSTQ RRPELEDSTL RYLHDLLAWV EENQRRIDGA 540
  541 EWGVDLPSVE AQLGSHRGMH QSIEEFRAKI ERARNDESQL SPATRGAYRD CLGRLDLQYA 600
  601 KLLNSSKARL RSLESLHGFV AAATKELMWL NEKEEEEVGF DWSDRNTNMA AKKESYSALM 660
  661 RELEMKEKKI KEIQNTGDRL LREDHPARPT VESFQAALQT QWSWMLQLCC CIEAHLKENT 720
  721 AYFQFFSDVR EAEEQLQKLQ ETLRRKYSCD RSITVTRLED LLQDAQDEKE QLNEYKGHLS 780
  781 GLAKRAKAIV QLKPRNPAHP VRGHVPLLAV CDYKQVEVTV HKGDQCQLVG PAQPFHWKVL 840
  841 GGSSSEAAVP SVCFLVPPPN QEAQEAVARL EAQHQALVTL WHQLHVDMKS LLAWQSLNRD 900
  901 IQLIRSWSLV TFRTLKPEEQ RQALRNLELH YQAFLRDSQD AGGFGPEDRL VAEREYGSCS 960
  961 RHYQQLLQSL EQGEQEESRC QRCISELKDI RLQLEACETR TVHRLRLPLD KDPARECAQR1020
 1021 IAEQQKAQAE VEGLGKGVAR LSAEAEKVLA LPEPSPAAPT LRSELELTLG KLEQVRSLSA1080
 1081 IYLEKLKTIS LVIRSTQGAE EVLKTHEEHL KEAQAVPATL QELEVTKASL KKLRAQAEAQ1140
 1141 QPVFNTLRDE LRGAQEVGER LQQRHGERDV EVERWRERVT QLLERWQAVL AQTDVRQREL1200
 1201 EQLGRQLRYY RESADPLSSW LQDAKSRQEQ IQAVPIANSQ AAREQLRQEK ALLEEIERHG1260
 1261 EKVEECQKFA KQYINAIKDY ELQLITYKAQ LEPVASPAKK PKVQSGSESV IQEYVDLRTR1320
 1321 YSELTTLTSQ YIKFISETLR RMEEEERLAE QQRAEERERL AEVEAALEKQ RQLAEAHAQA1380
 1381 KAQAELEARE LQRRMQEEVT RREEAAVDAQ QQKRSIQEEL QHLRQSSEAE IQAKAQQVEA1440
 1441 AERSRMRIEE EIRVVRLQLE TTERQRGGAE DELQALRARA EEAEAQKRQA QEEAERLRRQ1500
 1501 VQDESQRKRQ AEAELALRVK AEAEAAREKQ RALQALDELK LQAEEAERRL RQAEAERARQ1560
 1561 VQVALETAQR SAEVELQSKR ASFAEKTAQL ERTLQEEHVT VTQLREEAER RAQQQAEAER1620
 1621 AREEAERELE RWQLKANEAL RLRLQAEEVA QQKSLAQADA EKQKEEAERE ARRRGKAEEQ1680
 1681 AVRQRELAEQ ELEKQRQLAE GTAQQRLAAE QELIRLRAET EQGEQQRQLL EEELARLQHE1740
 1741 ATAATQKRQE LEAELAKVRA EMEVLLASKA RAEEESRSTS EKSKQRLEAE AGRFRELAEE1800
 1801 AARLRALAEE AKRQRQLAEE DAARQRAEAE RVLTEKLAAI SEATRLKTEA EIALKEKEAE1860
 1861 NERLRRLAED EAFQRRRLEE QAAQHKADIE ERLAQLRKAS ESELERQKGL VEDTLRQRRQ1920
 1921 VEEEIMALKA SFEKAAAGKA ELELELGRIR SNAEDTMRSK ELAEQEAARQ RQLAAEEEQR1980
 1981 RREAEERVQR SLAAEEEAAR QRKVALEEVE RLKAKVEEAR RLRERAEQES ARQLQLAQEA2040
 2041 AQKRLQAEEK AHAFVVQQRE EELQQTLQQE QNMLERLRSE AEAARRAAEE AEEAREQAER2100
 2101 EAAQSRKQVE EAERLKQSAE EQAQAQAQAQ AAAEKLRKEA EQEAARRAQA EQAALKQKQA2160
 2161 ADAEMEKHKK FAEQTLRQKA QVEQELTTLR LQLEETDHQK SILDEELQRL KAEVTEAARQ2220
 2221 RSQVEEELFS VRVQMEELGK LKARIEAENR ALILRDKDNT QRFLEEEAEK MKQVAEEAAR2280
 2281 LSVAAQEAAR LRQLAEEDLA QQRALAEKML KEKMQAVQEA TRLKAEAELL QQQKELAQEQ2340
 2341 ARRLQEDKEQ MAQQLVEETQ GFQRTLEAER QRQLEMSAEA ERLKLRMAEM SRAQARAEED2400
 2401 AQRFRKQAEE IGEKLHRTEL ATQEKVTLVQ TLEIQRQQSD QDAERLREAI AELEREKEKL2460
 2461 KQEAKLLQLK SEEMQTVQQE QILQETQALQ KSFLSEKDSL LQRERFIEQE KAKLEQLFQD2520
 2521 EVAKAKQLQE EQQRQQQQME QEKQELVASM EEARRRQREA EEGVRRKQEE LQRLEQQRQQ2580
 2581 QEKLLAEENQ RLRERLQRLE EEHRAALAHS EEIATSQAAA TKALPNGRDA LDGPSMEAEP2640
 2641 EYTFEGLRQK VPAQQLQEAG ILSMEELQRL TQGHTTVAEL TQREDVHRYL KGGSSIAGLL2700
 2701 LKPTNEKLSV YTALQRQLLS PGTALILLEA QAASGFLLDP VRNRRLTVNE AVKEGVVGPE2760
 2761 LHHKLLSAER AVTGYKDPYT GEQISLFQAM KKDLIVRDHG IRLLEAQIAT GGIIDPVHSH2820
 2821 RVPVDVAYQR GYFDEEMNRV LADPSDDTKG FFDPNTHENL TYLQLLERCV EDPETGLRLL2880
 2881 PLTDKAAKGG ELVYTDTEAR DVFEKATVSA PFGKFQGKTV TIWEIINSEY FTAEQRRDLL2940
 2941 RQFRTGRITV EKIIKIVITV VEEHERKGQL CFEGLRALVP AAELLDSGVI SHEVYQQLQR3000
 3001 GERSVREVAE ADEVRQALRG TSVIAGVWLE EAGQKLSIYE ALRRDLLQPE VAVALLEAQA3060
 3061 GTGHIIDPAT SARLTVDEAV RAGLVGPEMH EKLLSAEKAV TGYRDPYSGQ SVSLFQALKK3120
 3121 GLIPREQGLR LLDAQLSTGG IVDPSKSHRV PLDVAYARGY LDKETNRALT SPRDDARVYL3180
 3181 DPSTREPVTY SQLQQRCRSD QLTGLSLLPL SEKAVRARQE EVYSELQARE TLEKAKVEVP3240
 3241 VGGFKGRALT VWELISSEYF TEEQRQELLR QFRTGKVTVE KVIKILITIV EEVETQRQER3300
 3301 LSFSGLRAPV PASELLASKI LSRTQFEQLK DGKTSVKDLS EVGSVRTLLQ GSGCLAGIYL3360
 3361 EDSKEKVTIY EAMRRGLLRP STATLLLEAQ AATGFLVDPV RNQRLYVHEA VKAGVVGPEL3420
 3421 HEKLLSAEKA VTGYKDPYSG STISLFQAMK KGLVLRDHAI RLLEAQIATG GIIDPVHSHR3480
 3481 LPVDVAYQRG YFDEEMNRVL ADPSDDTKGF FDPNTHENLT YLQLLERCVE DPETGLRLLP3540
 3541 LRGAEKTEVV ETTQVYTEEE TRRAFEETQI DIPGGGSHGG SSMSLWEVMQ SDMIPEDQRA3600
 3601 RLMADFQAGR VTKERMIIII IEIIEKTEII RQQNLASYDY VRRRLTAEDL YEARIISLET3660
 3661 YNLFREGTKS LREVLEMESA WRYLYGTGSV AGVYLPGSRQ TLTIYQALKK GLLSAEVARL3720
 3721 LLEAQAATGF LLDPVKGERL TVDEAVRKGL VGPELHDRLL SAERAVTGYR DPYTEQPISL3780
 3781 FQAMKKELIP AEEALRLLDA QLATGGIVDP RLGFHLPLEV AYQRGYLNKD THDQLSEPSE3840
 3841 VRSYVDPSTD ERLSYTQLLK RCRRDDNSGQ MLLPLSDARK LTFRGLRKQI TVEELVRSQV3900
 3901 MDEATALQLQ EGLTSIEEVT KNLQKFLEGT SCIAGVFVDA TKERLSVYQA MKKGIIRPGT3960
 3961 AFELLEAQAA TGYVIDPIKG LKLTVEEAVR MGIVGPEFKD KLLSAERAVT GYKDPYSGKL4020
 4021 ISLFQAMKKG LILKDHGIRL LEAQIATGGI IDPEESHRLP VEVAYKRGLF DEEMNEILTD4080
 4081 PSDDTKGFFD PNTEENLTYL QLMERCITDP QTGLCLLPLK EKKRERKTSS KSSVRKRRVV4140
 4141 IVDPETGKEM SVYEAYRKGL IDHQTYLELS EQECEWEEIT ISSSDGVVKS MIIDRRSGRQ4200
 4201 YDIDDAITKN LIDRSALDQY RAGTLSITEF ADMLSGNAGG FRSRSSSVGS SSSYPISSAV4260
 4261 PRTQLASWSD PTEETGPVAG ILDTETLEKV SITEAMHRNL VDNITGQRLL EAQACTGGII4320
 4321 DPSTGERFPV TEAVNKGLVD KIMVDRINLA QKAFCGFEDP RTKTKMSAAQ ALKKGWLYYE4380
 4381 AGQRFLEVQY LTGGLIEPDT PGRVSLDEAL QRGTVDARTA QKLRDVSAYS KYLTCPKTKL4440
 4441 KISYKDALDR SMVEEGTGLR LLEAAAQSSK GYYSPYSVSG SGSTAGSRTG SRTGSRAGSR4500
 4501 RGSFDATGSG FSMTFSSSSY SSSGYGRRYA SGPSASLGGP ESAVA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle