YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40846454
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQSHNPIGI VFIISIITVT LVQVTHSVPF IVLHGIGDKC SNKGVTSFTE LLGDWSGSQG  60
   61 YCIEIGDGSW DSWTMPLLEQ TAVACEKVKN MSELSEGYNI VGLSQGNMVG RGLIELCDGG 120
  121 PPVKNFISLA GPHAGTASIP FCGSGWMCIF LDSLIKMEIY SNYIQEHLAP SGYLKIPTDI 180
  181 NGYLQGCRFL PKVNNEAPMN PIYKERFSKL ENLVLIMFEQ DTILIPKETS WFGYYPDGSF 240
  241 GSVLPVQQTP LYTEDWIGLK TLDEAGRVKF VNVTGNHLDI SKSDMKKHIV PYLVEQAPTA 300
  301 SPIVTESKTI SFQWLSNVWN FFIDISNHNE DPLLLRQVY

Type	Start	End	Confidence
Cytoplasmic	1	7	0.64
Transmembrane Helix	8	28	0.70
Non-Cytoplasmic	29	339	0.66