YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1749666, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFCIMRVSWI SGLLLVAHLA PSSAFNPLRF FLDDTFSSGA TEEHFMGPSD DGFALQQPTN  60
   61 YDPSMPFPLD ESASAAVDAV SNNYIVMFKP SVDKSKLEQH HRWIEHLHEK RSLDFKDVST 120
  121 FLMKHTFEIG DAFLGYAGRF SPWLVAELQK HPDIALVEPD RVMHVMTEQT FAPWGLARVS 180
  181 HRKKLGFFTM TRYQYNETAG EGVTAYVIDT GINIEHQDFQ GRATWGATIP TGEGEVDDHG 240
  241 HGTHVAGTIA GKTFGVSKNT KLVSFKVMRA VGTGSVSDII KGIEFAFKQS KKDKESIASV 300
  301 VNMSIGGDAS TALDLAVNAA IAGGLSCRAA GNDGEDACGT SPARVSNAMT VGASTWNDQI 360
  361 ASFSNIGSCV DIFAPGSLIL SDWIGSNRAS MILSGTSMAS PHVAGLAAYF ISLDPSLANH 420
  421 PVELKKYMLK FALKDLLNGI PEDTPNVLAF NNYE

Type	Start	End	Confidence
Cytoplasmic	1	6	0.60
Transmembrane Helix	7	25	0.57
Non-Cytoplasmic	26	454	0.92