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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ctg02_53|39312|M...
Protein type: Transmembrane
Type Confidence: 0.81
Topology Confidence: 0.33
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGYFTDLQN AEVLRAAESI VSSGQAVLLC GPSASGRTAL LSHLASKLGA KPPIPLHLTT  60
   61 AQDTRDLIGS YVMTNKPGDF RFILGPLAYA AQSGRWISIE EITTISQDSL LLLSSVVNTR 120
  121 TLSVGSYQIS VHPDFRIHAK TSADPALLST IVKSMFYPLV LPPLGNHLFQ VLTKHCNRGI 180
  181 CTILAHIHVQ FETHRLTAGR ISASDMVKWA RRIDLDLKNG GAVLNKAVQE ASAGTAATTL 240
  241 VSWLDDNTRM VMIKNAWEAF VLRYSKEQTR RAFLDILRLS LNIHEELMLS TLLKIKVDIR 300
  301 HDYTQKRLVC GRVSLPFYES PDERSLDDIC RTNHTTRLLE IISSAIRNNE PLLLVGPTGI 360
  361 GKTTCLQVIA RALGKKLHVV NMSSQTDAAD LLGGYVPATL DRILRNLYDA ITGSLGLYIS 420
  421 VRKNQIFVTE LHKSYAEKDI AKFLANCETA LSGMRQVLRK EVGEVVEQGS TEQRVSHDKK 480
  481 YARRGTYENS LYFLQSLGDT LEQATELHKI LCHEVETKKP TMAFKYQEGL LVQALVKGDW 540
  541 ILIDEINLAS YDLLDVISQL VNPEHNEIAI PDKGFVAKNP HFRVFAAMNP GSDVGKKDLP 600
  601 PTIRRCFTEI NVSEMSDDVD IVALTKSYLR MDDAMIEDRQ GLDPNVVYQL FTVLKARAKT 660
  661 DLVTAAEAKS PCFSLRSLCR ALSFAHRFRA AAGLRRSMYE GFMLAFGSML NEKSRQAVHA 720
  721 LILDKLLNGN KEYLLNPFII QPFNKPCTAM IFQATTKDEA VTVEYQEPQA AHGFLEEEKS 780
  781 RARSTDYVLT KSTRSYMTTI SRAIAAQLPI LLEGTTSSGK TSLIKHIAKQ FGCPITRINN 840
  841 HEHTDLSEYF GSYQPDPLTG QLVFKDGPLV TGMKQGHWVI LDELNMASSE ILEALNRLLD 900
  901 DNRELLVPDT QEIVRPAPGF LLFATQNPSG SYAGRKMLSE AFQNRFIMIE FADISTEELK 960
  961 EILINRSTSR HLAPQYCEKL ITTIQAIKMQ LSHRNNNAVM TNALITLRDL FRVADRLPRT1020
 1021 LTELAMGIFE LIGERQRDPA DKQLVAEIIA KNLGLKTFSV SAAEQEYAIR VRPIQSMIEK1080
 1081 ALKAGADSPK SAFLLKFQDI VWTPSMIRLF ALLFTSVSNG ESPLLVGVSG AGKTTSVELI1140
 1141 AAIMAQQLVQ VNLHKHTESA DFIGSLRPLR SRESMHAHLS VLKEYAATTT NVDKAVYAEI1200
 1201 KRLETTLGTK LFEWEDGPIL NCMKRGHILL LDEVSLADES VLERLNSVLE TSRELTVAEN1260
 1261 PNMPRPVIAH TGFKLIATMN PAGDYGKKEL SPAMRSRLTE FWMPHIRDIN EVRMILTRKL1320
 1321 QKTAIYRLGH QQGLDVVSLL ADFFAEMDRI TQSGRLGDVF TLSIRDILAV CDYITEVQTK1380
 1381 EGTELGQMLI DAVTLSILDG LPVRTQLGNM PACREVKHEM VLYLANRILS ANLTDIDLIQ1440
 1441 DLTVSISKDT NELTFLQAST QTVLATIPPG PQYNHAKALR KMTSFRLDAP TTIKNACRIA1500
 1501 KALRFQRPIL LEGDPGVGKS ALVSAIAEIC GYSLVRINLS EQTDLSDLLG SDLPAENGFR1560
 1561 WVDGVLLKAV KEGAFILLDE LNLANQTVLE GLNSLLDHRR SLFIPELMLS VKSPDTLRIF1620
 1621 GTQNPRSQGS GRKGLPQSFI NRFLNVYVDV LKSQDYDWIL SNLFTDIPTY VLDYILGSTK1680
 1681 QLRAGLEELK FGISGGPWEL NVRDMMRLCD MLTTTPGLAQ GITLAHAKHY AHILFGYRFR1740
 1741 TADDDAYVQN VLFSPHSLDS VAEATQSHHW YSLRPLWNVT EDVVKIGSLA IPRIDPVFRD1800
 1801 VLGTKLSYAH TSCFLTAQLV ALEALAVAVT QNLSCILVGS PESGKSSILR TLADVVRQPL1860
 1861 VHISASTATD VSDLIGAYEQ VDVLYDLKSV IRDLCLFVHS LPIKASYSAI SFSEFLKDLT1920
 1921 ASLDREIGDG LGSKSRAISM ESIVSEVVQK LLLEFMAKFS PDLDSGGLAA KNFSLFCSEI1980
 1981 LTQDTTPVDE RFSPHMPTIP ELCKSMASLY LSTQQSQTGR FVWRDSELIR ALERGYWVEL2040
 2041 TNANFCMPSV LDRLNSLLER GGGLEILEQG LEETRSIKVH PNFRLFISYA PTSDISRALR2100
 2101 NRSLELSIDI QVSHYNLLDI VRCVYTSSTA SGVSLDPYLI KLVSLVYFEL SRDNPEIVGL2160
 2161 GLLFKWLKLL VTYHKRFSTS VGDPKAVSSW VDRSFSSVFI ASTLNADLHR QYMQVYQNAR2220
 2221 LALQGDGSLE ACTLVEAAAV LNQLTLGAVR KLSISNSLQH SLALLELRTT VKPLDQLVSL2280
 2281 ADQEPQIMEP FSQVSGWLAI CVGHSLDFQH HKELVSNLLT STDINPMYLL TPPEPSSQAL2340
 2341 LKYISQGYLD MYSSPDSIIH QVIKYVSLCS PFYASILKLF IEGKFTTKDS YLLLYLIELS2400
 2401 QHLATDPNNY DYVALFFSLF ELLISHSIDP STKTYSLGQR QVMRTFFDMI LTDQYFESMP2460
 2461 RLLSGYIRSL FISAARNDLE TAWLAVRKNL ALARISVHYL PELFKVFRYV IERLNLCISP2520
 2521 EGVVFLQEGL SDSITASLWK DILATVIYMA CRADDQTGDY VPKLAILQDS ANRIDLCASK2580
 2581 LSGNQHPTAR ALAQMQSLFL LFTGKAFCMQ VSDTLEGWSQ RDLTTQLPIL LFRSMSFYHR2640
 2641 NAAGPITYLR GPIFVSTGEF VTSSLSVPAL LTNAIEEQAT SVLKSLLCRS EDFLSYVGNV2700
 2701 INSITTIVLR LFFAALEREA PSCDFTDGSF QLFALILETI VHSSNPLLAS LTQGVEDILK2760
 2761 AIISVQLSPS PLLLSGLVLT VASLVLYLLT SIANQRDPIV MTKHREVLYR RLAKLIATSI2820
 2821 EDSKLHALFV FGDGALSESS SIYKELSTLY NSYAEAADQY AAELLVRADD EDNTFFEDLS2880
 2881 SQLASLDGFE VHVLTFVSGV LNLEKVLQMH ESTECIEAIL DGLAVAERQI STTLAALLPR2940
 2941 LINYTVESSY YLDMTIPIAS FLMCLRVGLS AVISSVYAHV CDAINAARRL SSEGIGLQIT3000
 3001 LQDLLLLIQR VVVGTGDEFL DLLCYDKFIR SCCSSKTVST LHVARLFTLS LLQYSSCSKG3060
 3061 VQGDVSQFLL ADTLRPERVS SIAAQFEIEE ARSYRKYIAD HSIFKTRNQS STAEGVSEED3120
 3121 ELKTQIAALF PKNDSHFIKS DTSSDDEQPI SMSAQTKVDY DDAYATSFFT RMNMILIIGN3180
 3181 CILHLYTSDT EALPIQERLQ NLSSILQAHV PHLSRPLVAL QAVTYALSIC AGGVSSNLSI3240
 3241 RSPLTPETDR LMYPLVTGAT MGLVRVLSSR SPNVDYAKLQ TGKTRRAIHC EDIYSRPYPY3300
 3301 ETAEFCSTLL RKIIVRTQHL LTEWPDNVQL LDIMHVCDKL MELPVLEAPL VMFLTGAEVL3360
 3361 VRHLETWDKG APAVYKYVTN PNVPVPESLT KSLIHLMVTW RRVELMSWNG FFSRVHTQFS3420
 3421 NVSLTYWPEL LIASLTYQRS VTQGEPSTEA YYAQMREFLY ESNVGEFPVR LKLLYTLSAL3480
 3481 LSNIEELAEP ELVSSPHKTM TSAVLFSIAS EAVEFAKYMN KEFEEEAAQI KKRFEDQIRI3540
 3541 FEWNERSSYT SWLTAQNSHR LCTKIIREYT EVLQHATRAF HMGYSATYDR IPLSVTVQEY3600
 3601 LPLSSESGML PPALSQELVE RLNYCVEQMC HGRKESETLK RNEKNRLLSD VLDVLKETLG3660
 3661 CVLSSGFAFK QSFGWKLAHL CLPSVHSTFE LMHMFHDSLC QRCNEVEPHD IERMKRIIAC3720
 3721 LNQVFVQLSE LVVELADIEL LSRVMRTAPT GSSKSQADSV LYVYLADNSV PQLLTTQVMS3780
 3781 HVTKAHKMCM SLQEFLIGLP LDSCKSSPTK LHEQIGGFLE RFSADSVTAL NRIKIFSKFS3840
 3841 ALIKRLCSIT LIPLAFFEEA KAILQQILAD LSPIFSALIA VLPTAPISTF VTEHAKYLAQ3900
 3901 VTEVIDTLTE QLAQCRVEEA ATVSSIEWPY FALPFASVGE EGLSVEIIVD NAKKQVSAYM3960
 3961 TAFFTSTLQP ILQCATRHVV SLPVLPQKLL CQIETLKGDM QALADVLAKF IGPLISGAIA4020
 4021 LLRTGFHCHV DDDQKETDND NQSGLGLGDG TGDQNVSKEA AKELCEDDLM GNQNDRDQQE4080
 4081 QQEKDGDDEA IEMQNDFGGM SESLHHDIEE EDSNGSDEEE VLEKEMGDEQ GEAIDERNYN4140
 4141 EDDDSAEEYS DEQKKNTNNN NDTMELAAQE KDQDSINSEL SDPSGEQHEE QADATGSTDE4200
 4201 QAQEDDYNDL DDKNLSGQSD LSVPEADGED ETVNEELEEE QQQMSDLSNP DQDACAIEED4260
 4261 DDRDLPSSDE NAEEHDEHEA PVDIDDNEAS DEQSTYNDND RDDAINISAQ QQATNDEEEM4320
 4321 QKDTEYDQEN ITDSNPDANE VGTNDQKQTH EDNDQFRQEN IEDQWEAEST ENSQGEGAES4380
 4381 ADLKEGNPDM SLEEFQRIWK ERLNIHDRES EKDEAAEPQD MPLQSNKTVE FDDSKSGRDG4440
 4441 ALGLTESKHR NLTNQEFDNP NEERNVEHNS SCETSQSSHD RPPAEHLNPE ISDEGEESST4500
 4501 ASDKQEQAVL SHMRESSKDL LNPEGEVYQE LAVSLASEET KRAPEDVAAA SARGNHLLLD4560
 4561 LIKQTSAAAF SLAERLRIIL EPTVTSDLKG DFRTGKKLNL RRIIPFIASE FQKDKIWLRR4620
 4621 TKPSKRVYQV LLAVDDSSSM APIAKYALQA ITLLFNACKF LEVGQLSVFS FGQKFELLLP4680
 4681 ITDQYNDASL AYAIGSFTFA QNETRVSDAI SIASDYLDSV RFFKGSDSAL QLLLMISDGR4740
 4741 LKEKGGVARE IRKCMGRGQL PVLIVLDTDK KSIMDIKSVS FITDSSGKRV AQTSMYLDDF4800
 4801 PFQCYALLRH IEDLPETLVA VIKRWIESVS VYNAV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle