YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|171543915, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	21	0.94
Transmembrane Helix	22	43	0.93
Non-Cytoplasmic	44	75	0.94
Transmembrane Helix	76	94	0.91
Cytoplasmic	95	101	0.77
Transmembrane Helix	102	123	0.88
Non-Cytoplasmic	124	134	0.85
Transmembrane Helix	135	158	0.85
Cytoplasmic	159	165	0.77
Transmembrane Helix	166	185	0.93
Non-Cytoplasmic	186	195	0.80
Transmembrane Helix	196	215	0.96
Cytoplasmic	216	228	0.87
Transmembrane Helix	229	248	0.91
Non-Cytoplasmic	249	264	0.87
Transmembrane Helix	265	285	0.90
Cytoplasmic	286	294	0.86
Transmembrane Helix	295	314	0.92
Non-Cytoplasmic	315	321	0.65
Transmembrane Helix	322	340	0.97
Cytoplasmic	341	354	0.88
Transmembrane Helix	355	377	0.87
Non-Cytoplasmic	378	408	0.92
Transmembrane Helix	409	431	0.92
Cytoplasmic	432	488	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNCCESASN FFGPQKNTNV RVSLPAVCFV WQIAMIVLFG VFIRYDEESD AHWVELKKTE  60
   61 NLTDLQNEFY FRYPSFQDVH VMIFVGFGFL MTFLKRYSFS AVGFNFLIAA FGLQWALLMQ 120
  121 GWFHHFDYST GKIYIGIESL INADFCCAAS LIAYGAILGK VSPVQLMVVT LFGVTLFAVE 180
  181 EYIILDLLHC RDSGGAMVIH CFGGYYGLAI SWVLYRPNLH RSKRLNGSVY HSDLFAMIGT 240
  241 LFLWMFWPSF NSAIANHGDG QHRTAMNTYI ALASSVLTTV ALSSMSKKEG KLDMVHIQNA 300
  301 TLAGGVAMGT AAEFMITPYG SLIVGFCIGI ISTFGYLYVT PFLEKRLKLQ DTCGIHNLHA 360
  361 VPGMLGGFIG AIVAATASES VYSKQGLIDT FGFTGKYENR SPGTQGGYQA AGVCVAMAFG 420
  421 LVGGAIVGFI LKFPIWGDAA DDYCFDDEAY WELPEEEETI PPVLEYNNHM TQQKHQETPE 480
  481 TSFSVVES