YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	QPCT_BOTJA
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARERRDSKA ATFFCLAWAL CLALPGYPQH VSGREDRADW TQEKYSHRPT ILNATCILQV  60
   61 TSQTNVSRMW QNDLHPILIE RYPGSPGSYA VRQHIKHRLQ GLQAGWLVEE DTFQSHTPYG 120
  121 YRTFSNIIST LNPLAKRHLV IACHYDSKYF PPQLDGKVFV GATDSAVPCA MMLELARSLD 180
  181 RPLSFLKQSS LPPKADLSLK LIFFDGEEAF VRWSPSDSLY GSRSLAQKMA STPHPPGARN 240
  241 TYQIRGIDLF VLLDLIGARN PVFPVYFLNT ARWFGRLEAI ERNLNDLGLL NNYSSERQYF 300
  301 RSNLRRHPVE DDHIPFLRRG VPILHLIPSP FPRVWHTMED NEENLDKPTI DNLSKILQVF 360
  361 VLEYLNLG

Type	Start	End	Confidence
Signal Peptide	1	33	0.90
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	368	0.99