YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12407294
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLRKTHPL LKIANDALVD LPTPSNISAW WNFGSLLGLC LIVQIVTGLF LAMHYTADIS  60
   61 SAFSSVAHIC RDVNFGWFIR NLHANGASFF FICIYLHVGR GLYYGSYLYK ETWNIGVVLL 120
  121 LLVMMTAFVG YVLPWGQMSF WGATVITNLL SAVPYVGNTL VQWIWGGFSV DNATLTRFFA 180
  181 FHFLLPFVIL AATILHLLFL HETGSNNPLG LNSDADKIPF HPYFSYKDIL GFAIMLTTLT 240
  241 SLALFAPNYL GDPDNFTPAN PLVTPPHIKP EWYFLFAYAI LRSIPNKLGG VLALLASILV 300
  301 LMIVPLLHTS KQRGLMFRPL SQAIFWTLVA DVIILTWIGG MPVEHPYIII GQIASFIYFF 360
  361 IFLGLFPLAG WLENKLLQTA CSCSSVSEHR SCKPAAGG

Type	Start	End	Confidence
Cytoplasmic	1	30	0.62
Transmembrane Helix	31	55	0.86
Non-Cytoplasmic	56	81	0.57
Transmembrane Helix	82	104	0.82
Cytoplasmic	105	111	0.55
Transmembrane Helix	112	135	0.87
Non-Cytoplasmic	136	177	0.36
Transmembrane Helix	178	200	0.92
Cytoplasmic	201	228	0.53
Transmembrane Helix	229	250	0.82
Non-Cytoplasmic	251	287	0.65
Transmembrane Helix	288	309	0.90
Cytoplasmic	310	319	0.75
Transmembrane Helix	320	341	0.87
Non-Cytoplasmic	342	347	0.74
Transmembrane Helix	348	370	0.91
Cytoplasmic	371	398	0.83