YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12407292
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.22
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.70
Transmembrane Helix	30	54	0.85
Non-Cytoplasmic	55	81	0.59
Transmembrane Helix	82	104	0.83
Cytoplasmic	105	111	0.57
Transmembrane Helix	112	135	0.87
Non-Cytoplasmic	136	142	0.49
Transmembrane Helix	143	166	0.81
Cytoplasmic	167	177	0.48
Transmembrane Helix	178	200	0.93
Non-Cytoplasmic	201	228	0.53
Transmembrane Helix	229	250	0.83
Cytoplasmic	251	266	0.42
Transmembrane Helix	267	281	0.22
Non-Cytoplasmic	282	287	0.54
Transmembrane Helix	288	309	0.90
Cytoplasmic	310	319	0.67
Transmembrane Helix	320	341	0.88
Non-Cytoplasmic	342	347	0.65
Transmembrane Helix	348	369	0.92
Cytoplasmic	370	398	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLRKTHPL LKIANDALVD LPAPSNISAW WNFGSLLGLC LIAQILTGLF LAMHYTSDIA  60
   61 TAFSSVAHIC RDVNFGWLIR NMHANGASFF FICIYLHIGR GLYYGSYLYK ETWNIGVILL 120
  121 LLVMMTAFVG YVLPWGQMSF WGATVITNLL SAVPYVGSTL VQWIWGGFSV DHATLTRFFA 180
  181 FHFLLPFVIL AVTVLHLLFL HETGSNNPAG LNSDADKVPF HPYFSYKDLL GFAIMLLALT 240
  241 SLALFTPNSL GDPDNFIPAN PLVTPPHIKP EWYFLFAYAI LRSIPNKLGG VLALLASILV 300
  301 LMLVPFLHTS KQRGLTFRPV SQFLFWVLVA DVMILTWIGG MPVEHPYIII GQIASVLYFS 360
  361 IFLAFFPMGG WAENKLLLSN CNSSSAPERR SCKPAAGG