YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12407254
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLRKTHPL LKIANDALVD LPAPSNISAW WNFGSLLGLC LGAQLVTGIF LAMHYTADIA  60
   61 TAFSSVTHIC RDVNFGWLVR NMHANGASFF FICIYLHVGR GLYYGSYLYK ETWNIGVVLL 120
  121 LLVMMTAFVG YVLPWGQMSF WGATVITNLL SAVPYVGNTL VQWIWGGFSV DNATLTRFFA 180
  181 FHFLLPFIIA AVTILHLLFL HETGSNNPAG LNSDADKIPF HPHFSYKDLL GFAIMLLALT 240
  241 SLALFSPNYL GDPDNFTPAN PLVTPPHIKP EWYFLFAYAI LRSIPNKLGG VLALLASILV 300
  301 LMLVPFLHTS KQRSLTFRPL SQFIFWTLVA DVMILTWIGG MPVEHPYVII GQIASVLYFS 360
  361 IFLVFLPMAG WLENKMLALN CNSSSAPERR PCKPDAGG

Type	Start	End	Confidence
Cytoplasmic	1	29	0.65
Transmembrane Helix	30	55	0.82
Non-Cytoplasmic	56	81	0.54
Transmembrane Helix	82	104	0.81
Cytoplasmic	105	111	0.51
Transmembrane Helix	112	135	0.87
Non-Cytoplasmic	136	177	0.42
Transmembrane Helix	178	200	0.92
Cytoplasmic	201	228	0.64
Transmembrane Helix	229	250	0.85
Non-Cytoplasmic	251	287	0.72
Transmembrane Helix	288	309	0.90
Cytoplasmic	310	319	0.83
Transmembrane Helix	320	341	0.88
Non-Cytoplasmic	342	347	0.80
Transmembrane Helix	348	369	0.92
Cytoplasmic	370	398	0.88