YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148224798, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGALFPSL VPGSRGSSSK YLVEFRAGKM SLKGSTVTPD KRKGLVYIQQ TDDSLIHFCW  60
   61 KDRTSGSVED DLIIFPDDCE FKRVSQCTTG RVYVLKFKAG SKRLFFWMQE PKTDKDEEYC 120
  121 RKLNEYLNNP PMPGALGGSG SGSHELSALG GEGGLQSLLG NMSHNQLMQL IGPTGLGGLG 180
  181 GLGALTGPGL ASLLGSGGPT TSSSSSSSRS QSAAVTPSST TSSTRTTSAP VAPAAAPATT 240
  241 PSPAVSSNDG ASEATSPTQP IQLSDLQNIL ATMNVPATGE GGQQVDLASV LTPEIMAPIL 300
  301 ANAEVQERLT PYLPSGESLP QTADEIQNTL TSPQFQQALS MFSAALASGQ LGPLMSQFGL 360
  361 PADAVDAANK GDIEAFAKAM QSTSSQKERE SSEKKEEEED MSLD

Type	Start	End	Confidence
Signal Peptide	1	16	0.69
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	404	0.83