YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12657603
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLGAVKMEG HEHTDWSTYY GEPECYTSVG NMNTGLGMNS MNTYMSMSGM STGANMTANS  60
   61 MNMSYVNTGM SPSMTGMSPG TGAMNGMGAG MTAMGAALSP SMSPMTAQPA SMNALTSYSN 120
  121 MNAMSPIYGQ SNINRSRDPK TYRRSYTHAK PPYSYISLIT MAIQQSPSKM LTLAEIYQWI 180
  181 MDLFPFYRQN QQRWQNSIRH SLSFNDCFVK VPRSPDKPGK GSFWTLHPDS GNMFENGCYL 240
  241 RRQKRFKCDK KMGMKDGGRK SGDGGSSNSS SESCNGNESP HSNSSSGEHK RSLSDMKSSQ 300
  301 ALSPEHAAAS PVSQGQHLMS QHHSVLAHEA HLKPEHHYSF NHPFSINNLM SSEQQHHKMD 360
  361 LRTYEQVMHY SGYGSPVTGA LSMGSMTGKA GLDSSSIPDT TYYQGVYSRP IMNSS

Type	Start	End	Confidence
Cytoplasmic	1	78	0.47
Transmembrane Helix	79	98	0.68
Non-Cytoplasmic	99	415	0.70