YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2463569, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLGAILKH PDDFYPLLKL KMAARNAEKQ IPPEPHWAFC YTMLHKVSRS FALVIQQLGI  60
   61 ELRNAVCIFY LVLRALDTVE DDTSIETDVK VPILIAFHRH IYDRDWHFSC GTKEYKVLMD 120
  121 QFHHVSTAFL ELGKNYQEAI EDITKRMGAG MAKFICKEVE TIDDYDEYCH YVAGLVGLGL 180
  181 SKLFHASGSE DLAPDDLSNS MGLFLQKTNI IRDYLEDINE IPKSRMFWPR QIWSEYVNKL 240
  241 EDLKYEENSV KAVQCLNDMV TNALMHPEDC LKYMAALRDP PIFRFCAIPQ IMAIGTLALC 300
  301 YNNIEVFRGV VKMRRGLTAK VIDRTKTMAD VYGAFFDFAS MLEPKVDKND PNATKTLSRL 360
  361 EAIQKTCRES GLLSKRKSYI VNDESGYGST MIVILVIMVS IIFAYLSANH HNS

Type	Start	End	Confidence
Non-Cytoplasmic	1	286	0.73
Transmembrane Helix	287	305	0.51
Cytoplasmic	306	385	0.66
Transmembrane Helix	386	408	0.91
Non-Cytoplasmic	409	413	0.66