YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14588626, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHQAHPYHM VDPSPWPLTG AVGALLMTSG LAIWFHFHST LLMTLGLILV TLTTAQWWRD  60
   61 VVREGTFQGH HTPPVQKGLR YGMILFITSE VLFFLGFFWA FYHSSLAPTP ELGGCWPPAG 120
  121 ITALDPFEVP LLNTAVLLAS GVTVTWAHHS IMEGKRKQAI QSLGLTILLG GYFTCLQAME 180
  181 YYEAPFTIAD GVYGSTFFVA TGFHGLHVII GSTFLAVCFL RQVRHHFTSD HHFGFEAAAW 240
  241 YWHFVDVVWL FLYVSIYWWG S

Type	Start	End	Confidence
Cytoplasmic	1	15	0.80
Transmembrane Helix	16	35	0.90
Non-Cytoplasmic	36	40	0.65
Transmembrane Helix	41	58	0.91
Cytoplasmic	59	78	0.91
Transmembrane Helix	79	102	0.90
Non-Cytoplasmic	103	128	0.92
Transmembrane Helix	129	149	0.91
Cytoplasmic	150	158	0.89
Transmembrane Helix	159	181	0.87
Non-Cytoplasmic	182	199	0.87
Transmembrane Helix	200	220	0.93
Cytoplasmic	221	238	0.90
Transmembrane Helix	239	259	0.92
Non-Cytoplasmic	260	261	0.83