YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3176106
Protein type:	Globular with Signal Peptide
Type Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAASNPYL PGNSLLSAAG AIVHSDAAAG GMQPGSVAVT SVAGGGGGGA GGGGNGGNNN  60
   61 ANNGYRGDPS SVKMVQSDFM VQSNGGHMLS HAHQWVTALP HAAAAAAAAA AAAAAEAGSP 120
  121 WSSMSGSPQQ QQQQQQQQQD VKGGGGGRED LLHHRPPHLG PPPPHQGHWG SMAGQQQQQQ 180
  181 QQQQAPLLYS QPGGFTVNGM LSPPPGSQAL GVHPGLVRGD TPELGDHPGH HHHHHQQHHH 240
  241 HPHAHHGGGG GGGGGGGGLN SHDPHSDEDT PTSDDLEQFA KQFKQRRIKL GFTQADVGLA 300
  301 LGTLYGNVFS QTTICRFEAL QLSFKNMCKL KPLLNKWLEE ADSSTGSPTS IDKIAAQGRK 360
  361 RKKRTSIEVS VKGALESHFL KCPKPSAQEI TSLADSLQLE KEVVRVWFCN RRQKEKRMTP 420
  421 PGIPQQAPDD VYSQVGNVSA DTPPPHHGLQ GGVQ

Type	Start	End	Confidence
Signal Peptide	1	27	0.69
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	454	0.91