YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TRM5_MACFA
Protein type:	Globular with Signal Peptide
Type Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLWILWRPF GFSRRLLKLE RHSITESKSL IPLAWTSLTQ TLSESPGIFL LGQRKRFSTM  60
   61 PEIETHEGDS ELFSPPSDVR GMTKLDRTAF KKTVNIPVLK VRKEIVSRLM RSLRRAALQR 120
  121 PGIKRVIEDP EDKESRLILL DPYKIFTHDS FEKAGLSVLE QLNVSPQISK YNLELTYENF 180
  181 KSEEILRAVL PEGQDVTSGF SRVGHIAHLN LRDHQLPFKQ LIGQVMIDKN PGITSAVNKI 240
  241 NNIDNMYRNF HMEVLSGEQN MMTKVRENKY TYEFDFSKVY WNPRLSTEHS RITELLKAGD 300
  301 VLFDVFAGVG PFAIPVAKKN CTVFANDLNP ESHKWLLHNC KLNKVDQKVK IFNLDGKDFL 360
  361 QGPVKEELIQ LLSLSKERKP SVHIVMNLPA KAIEFLSAFK WLLDGQPCSN EFLPIVHCYS 420
  421 FSKDANPAKD VRQRAGAVLG ISLEACSSVH LVRNVAPNKE MLCITFQIPA AVLYKNQTKN 480
  481 PENHEDPPLK RQRTAEAFSD EKTQIASNT

Type	Start	End	Confidence
Signal Peptide	1	43	0.60
N-region	1	34
H-region	35	40
C-region	41	43
Cleavage Site	43	44
Non-Cytoplasmic	44	509	0.99