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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|9930140
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMNLMIVES VEAVDMGSSD NDNETTEQVP LVSASRRNLA KIVADCRLQI EVEPATSAVA  60
   61 AAAAAAASVA SPPATSDATA ATSVASSDSS ASSSASSTSS SSSSSSSTSS EFTHTSQTTI 120
  121 PSTDNLTSSN GLANIGKSIL VDAKSNSPAS LSYHFEKSAA ANQQKQHHNI NICNSHHPHH 180
  181 HSQNQPQHSL QLTFQNLNVL HNERQILSDV SGFVSPCEVL AIMGPSGSGK TTLLDCLSGQ 240
  241 RHIDSGSVFL NREPLTKKWR RRIGYVLQEE IFFPQLTLRE TVVYTALLRL PESMPRAEKM 300
  301 RQVDHILEAL ELGCCQQTKF GDYLNRGLSG GEKKRANIAC ELLTNPLLML LDEPTSGLDS 360
  361 HSAISLMKVL KRYAQLEQKT IVISVHQPSS QMFHMFDKLL LLHQGRTAYF GDVQNIYRHF 420
  421 EDIGVTIKPH YNPADFVLEQ LKSHPDIREK LFIAAKESHG NYLNRNCITS SHHNQVSVSG 480
  481 AKGKKQADSI LIDDIINNSY NQRSNRHHHQ YENLHHTSNG CRVEEDEEAA QHLVWCAADS 540
  541 QSNFSSCASS DCHSYSAGSG PGHSADDDWL SYPTSFHTQL CVLSSRNFRE AKPRMLSKLN 600
  601 WFQTIGLALM AGAIWFQLPR TEEFLHDLQG WMFFSQTYWM LFALFGALNS FPSEREVVSK 660
  661 ERRSGAYRLS AYYLAKMCAE LPLVITLPTV YLMISYPMLG CTSLKLFFLM LIFLLINTIV 720
  721 AQSVGFFIGA CCMDMNVSIT LSALYTLATQ LFGGYLSSRI PEGLSWIRYT SMIHYAYQNM 780
  781 QLLEFSEGAA IGCGSPSSYE ICKQQSTEFI PYEEILKAQN STSPLWLNTL ILMMFFLVFR 840
  841 CLGYAVLRFL RCPKKT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle