YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10801600
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYALLGIPL TLVMFQSLGE RINTFVRYLL HRAKRGLGMR HAEVSMANMV LIGFVSCIST  60
   61 LCIGAAAFSY YERWTFFQAY YYCFITLTTI GFGDYVALQK DQALQTQPQY VAFSFVYILT 120
  121 GLTVIGAFLN LVVLRFMTMN AEDEKRDAEH RALLTHNGQA GGLGGLSCLS GSLGDGVRPR 180
  181 DPVTCAAAAG GMGVGVGVGG SGFRNVYAEM LHFQSMCSCL WYKSREKLQY SIPMIIPRDL 240
  241 STSDTCVEHS HSSPGGGGRY SDTPSHPCLC SGTQRSAISS VSTGLHSLAT FRGLMKRRSS 300
  301 V

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.53
Transmembrane Helix	7	25	0.54
Cytoplasmic	26	45	0.74
Transmembrane Helix	46	68	0.92
Non-Cytoplasmic	69	109	0.48
Transmembrane Helix	110	134	0.85
Cytoplasmic	135	152	0.48
Transmembrane Helix	153	174	0.55
Non-Cytoplasmic	175	183	0.69
Transmembrane Helix	184	206	0.81
Cytoplasmic	207	301	0.77