YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PEX14_CRILO
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSEQAEQP SQPSSSPGSE NVVPREPLIA TAVKFLQNSR VRQSPLATRR AFLKKKGLTD  60
   61 DEIDLAFQQS GTATEEPPSL GLATPVAPVQ TPHLIAQPCS PGSSRWRDYG ALAIIMAGIA 120
  121 FGFHQLYKKY LLPLILGGRE DRKQLERMAS SLSELSGSVA QTVTQVQTTL ASVQELLRQQ 180
  181 QQKVQELAHE LAAAKATTST NWILESQNIN ELKSEINSLK GLLLNRRQFP PSPSAPKIPS 240
  241 WQIPVKSPSP SSPAAVNHHS SSDISPVSNE STSSSPGKES HSPEGSTATY HLLGPQEEGE 300
  301 GVVDVKGQVR MEVQGEEEKR EDKEEEEEEE EEDVSHVDEE DVLGVQREDR RGGDGQINEQ 360
  361 VDKLRRPEGA SNESERH

Type	Start	End	Confidence
Cytoplasmic	1	108	0.52
Transmembrane Helix	109	127	0.55
Non-Cytoplasmic	128	377	0.94