YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148224
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQQQKDWET RENAFAAFTM GPLTDFWRQR DEAEFTGVDD IPVRFVRFRA QHHDRVVVIC  60
   61 PGRIESYVKY AELAYDLFHL GFDVLIIDHR GQGRSGRLLA DPHLGHVNRF NDYVDDLAAF 120
  121 WQQEVQPGPW RKRYILAHSM GGAISTLFLQ RHPGVCDAIA LTAAMFGIVI RMPSFMARQI 180
  181 LNWAEAHPRF RDGYAIGTGR XXALPFAINV LTHSRQRYRR NLRFYADDPT IRVGGPTYHW 240
  241 VRESILAGEQ VLAGAGDDAT PTLLLQAEEE RVVDNRMHDR FCELRTAAGH PVEGGRPLVI 300
  301 KGAYHEILFE KDAMASVALH AIVDFFNRHN SPSGNRSTEV

Type	Start	End	Confidence
Cytoplasmic	1	153	0.70
Transmembrane Helix	154	175	0.73
Non-Cytoplasmic	176	192	0.45
Transmembrane Helix	193	213	0.50
Cytoplasmic	214	340	0.55