YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FADS1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPDPVQTPD PASAQLRQMR YFTWEEVAQR SGREKERWLV IDRKVYNISD FSRRHPGGSR  60
   61 VISHYAGQDA TDPFVAFHIN KGLVRKYMNS LLIGELAPEQ PSFEPTKNKA LTDEFRELRA 120
  121 TVERMGLMKA NHLFFLFYLL HILLLDVAAW LTLWIFGTSL VPFTLCAVLL STVQAQAGWL 180
  181 QHDFGHLSVF STSTWNHLVH HFVIGHLKGA PASWWNHMHF QHHAKPNCFR KDPDINMHPL 240
  241 FFALGKVLSV ELGKEKKKHM PYNHQHKYFF LIGPPALLPL YFQWYIFYFV VQRKKWVDLA 300
  301 WMLSFYVRVF FTYMPLLGLK GLLCLFFIVR FLESNWFVWV TQMNHIPMHI DHDRNVDWVS 360
  361 TQLQATCNVH QSAFNNWFSG HLNFQIEHHL FPTMPRHNYH KVAPLVQSLC AKYGIKYESK 420
  421 PLLTAFADIV YSLKESGQLW LDAYLHQ

Type	Start	End	Confidence
Cytoplasmic	1	132	0.96
Transmembrane Helix	133	153	0.83
Non-Cytoplasmic	154	154	0.33
Transmembrane Helix	155	175	0.70
Cytoplasmic	176	267	0.54
Transmembrane Helix	268	288	0.91
Non-Cytoplasmic	289	308	0.54
Transmembrane Helix	309	329	0.92
Cytoplasmic	330	447	0.61