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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|6006291
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEQERKVTA KEASRKILSK LALPTRPWGQ SMKQSFAFDN VGYEGGLDST CSSSTTTGVV  60
   61 SILGMTCHSC VKSIEDRISS LKGIVSIKVS LEQGSATVKY VPSVLNLQQI CLQIEDMGFE 120
  121 ASAAEGKAAS WPSRSSPAQE AVVKLRVEGM TCQSCVSSIE GKIRKLQGVV RVKVSLSNQE 180
  181 AVITYQPYLI QPEDLRDHIC DMGFEAAIKN RTAPLRLGPI DINKLESTNL KRAAVPPIQN 240
  241 SNHLETPGHQ QNHLATLPLR IDGMHCKSCV LNIEGNIGQL PGVQNIHVSL ENKTAQVQYD 300
  301 SSCITPLFLQ TAIEALPPGY FKVSLPDGLE KESGSSSVPS LGSSQRQQEP GPCRTAVLTI 360
  361 TGIPRDSSVQ PMEDMLSQMK GVQQIDISLA EGTGAVLYDP SVVSSDELRT AVEDMGFEVS 420
  421 VNPENITTNR VSSGNSVPQA VGDSPGSVQN MASDTRGLLT HQGPGYLSDS PPSPGGTASQ 480
  481 KCFVQIKGMT CASCVSNIER SLQRHAGILS VLVALMSGKA EVKYDPEVIQ SPRIAQLIED 540
  541 LGFEAAIMED NTVSEGDIEL IITGMTCASC VHNIESKLTR TNGITYASVA LATSKAHVKF 600
  601 DPEIIGPRDI IKVIEEIGFH ASLAHRNPNA HHLDHKTEIK QWKKSFLCSL VFGIPVMGLM 660
  661 IYMLIPSSKP HETMVLDHNI IPGLSVLNLI FFILCTFVQF LGGWYFYVQA YKSLRHKSAN 720
  721 MDVLIVLATT IAYAYSLVIL VVAIAEKAEK SPVTFFDTPP MLFVFIALGR WLEHVAKSKT 780
  781 SEALAKLMSL QATEATVVTL GEDNLILREE QVPMELVQRG DIIKVVPGGK FPVDGKVLEG 840
  841 NTMADESLIT GEAMPVTKKP GSIVIAGSIN AHGSVLIKAT HVGNDTTLAQ IVKLVEEAQM 900
  901 SKAPIQQLAD RFSGYFVPFI IIISTLTLVV WIIIGFVDFG IVQKYFPSPS KHISQTEVII 960
  961 RFAFQTSITV LCIACPCSLG LATPTAVMVG TGVAAQNGVL IKGGKPLEMA HKIKTVMFDK1020
 1021 TGTITHGVPR VMRFLLLVDV ATLSLRKVLA VVGTAEASSE HPLGVAVTKY CKEELGTETL1080
 1081 GYSTDFQAVP GCGISCKVSN VESILAHRGP TAHPIGVGNP PIGE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle