YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3868790
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSLLKGQV ANVIQKVINT DFPAPFTWVT GYFAMVVGAS MTFVVQSSSV FTSAITPLIG  60
   61 LGVISIERAY PLTLGSNIGT TTTAILAALA SPREKLSSSF QIALCHFFFN ISGILLWYPL 120
  121 PCTRLPIRMA KALGKRTAKY RWFAVLYLLV CFLLLPSLVF GISMAGWQAM VGLGTPFGAL 180
  181 LAFVVLVNVL QSRSPGHLPK WLQTWDFLPR WMHSLQPLDG LITRATLCYA RPEPRSPQLP 240
  241 PRVFLEELPP ATPSPRLALP AHHNATRL

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.67
Transmembrane Helix	29	61	0.73
Cytoplasmic	62	69	0.70
Transmembrane Helix	70	91	0.84
Non-Cytoplasmic	92	99	0.86
Transmembrane Helix	100	121	0.92
Cytoplasmic	122	141	0.91
Transmembrane Helix	142	162	0.95
Non-Cytoplasmic	163	168	0.73
Transmembrane Helix	169	190	0.91
Cytoplasmic	191	268	0.97