YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83318123
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTINENRMRI IPMDDTKNYS GSEENDTINL ENNSNDLSSY QNFLIGGPNT ESYKYTDKNC  60
   61 HALVKKEKKN PTSHQTANNY HYKSSNGSIK HMHLMKRKKG FIGKDPYCST HLILGSGRSN 120
  121 KKLKKKFLWN RGIDQNTNVS ELSYIRDFEN NSFMHDNSQH LVLYDNNNNR YMDYSRNAKE 180
  181 IRSEKMRYFF VYSPDIIQRW LRVIFNIIIT SLIVTLIYFI FISIREDINK KVAIQVQNVK 240
  241 EESNTCKKQY YAHKCGTVNL PLLNEKCEEW LKCMNTDHKL YQDISFLSAQ MLGQIMNAFI 300
  301 VQFEWKSICV IAFIFLLIFI GSNYALSIGG ANKTNNNDYN LYNPIMNPSH GIPPYSPYFN 360
  361 FYPYMSPPLN YNNPYNPDFT LMNTSYLHNK YFQDNNFNRS PYNYSSSYQQ HNNGHNDSNN 420
  421 SVSRNKENSE NYNQNQKDGN KDSKKVGFLK YLTRDFK

Type	Start	End	Confidence
Non-Cytoplasmic	1	202	0.65
Transmembrane Helix	203	222	0.96
Cytoplasmic	223	304	0.60
Transmembrane Helix	305	328	0.78
Non-Cytoplasmic	329	457	0.55