YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83286353
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFALLRFAFD GGVKVKSAAE VGKRAVEYFR GDDFVSFLSS KQDILKKKFP KLIGNRNLSE  60
   61 MKEVEEFADL FIQKGFIYKA QYKPLKGVHE MDENGVYKRP KWPKRLIMTS KQNFDKAGFY 120
  121 ILVYERNKKL QYFMLMILIS IVLICCMFPV WPLKLKLALW HLSVVFIGLL SAIIVGRIIT 180
  181 FVFFWFFGVD YWIFPNLFDE DCSIVESFIP FHSWERRNDS WFLVFARAVT AVLVAIGIHQ 240
  241 LGKTHSISDI QNFAKQSFID IIEWGNKKLS DTPENTFMYK SIDSKATFEE QEDIEDPEDQ 300
  301 IVYDDNEENY DCLKKCGFPP FEELVRRCFL KCDCMEKIIK SHCYTKKCSK ATKEVLDEAH 360
  361 KEACFQNIKT

Type	Start	End	Confidence
Cytoplasmic	1	131	0.74
Transmembrane Helix	132	153	0.93
Non-Cytoplasmic	154	161	0.58
Transmembrane Helix	162	187	0.85
Cytoplasmic	188	220	0.71
Transmembrane Helix	221	242	0.87
Non-Cytoplasmic	243	370	0.71