YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23485335
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKQALRRRN KLLKKNKERM DILMGISKAT EIEKDEEKKL KIEKNENADD NNNQNSNDKK  60
   61 QENEKLKNSN LNIMNETNTS PVTVSNSDTI NDIDLNANHX NGKEDKTDGK EDKTDGNEDK 120
  121 TDEKKTDFSE STSQTNGQED SEKNKIKKNE NCLTQSNDKK ERSNIKEKKN KDIDKTKDNN 180
  181 SNLDNNDTKE NENTTPIKVD RKKKIQFFIL IICSMLISLL KRKFYDNKKI VYIDKSFINK 240
  241 KMIFRFMNSK FFLIFFSFLY NLLFSLVDIR SYLKKKNMTI YDIVENIKNI RNKFKNESEA 300
  301 LFFLLNNGST FSIFFVNIIK SYILFMFLTH LFDDIFHSYS VFTSTPIFQK VNTI

Type	Start	End	Confidence
Cytoplasmic	1	204	0.54
Transmembrane Helix	205	225	0.63
Non-Cytoplasmic	226	245	0.55
Transmembrane Helix	246	269	0.79
Cytoplasmic	270	300	0.53
Transmembrane Helix	301	332	0.62
Non-Cytoplasmic	333	354	0.50