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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|82913424
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLISRLLGF VRDLIIARTF GADAATDAFF VAFRIPNFLR RLFAEGAFSQ GLVPVLSELR  60
   61 VSSDAATVRQ TIARMAGTLG LVAALLTCLG MAAAPVLTFL FAPGFQAQPF QFGLTVEMLR 120
  121 ITFPYLFFVT LTAFAGGVLH TWGQFAVPAF TPALLNLAMI AAALWLAPLL DLPVEALAWG 180
  181 VFAAGLLQLA FQLPSLWGIR QISLPCPVWR DREVLRMFKL MGPAILGVSA TQINLLLDTL 240
  241 VASFLVSGSV SWLYYSDRLV ELPQGLLGVA IGTAILPHLA AGHLDHDRDG FSRTLDWALR 300
  301 WVVLLGLPAT LGLMILAKPL VFTLFEHDEF SDHDTEMASR SLIAYAAGLP GAVAVKVLAS 360
  361 GFSARRDVRT PLRYGLYAIA ANGVLAPALA FLLAPYGWGH AGLAAATAAA TSLNAALLLR 420
  421 KLLAEGSYRP DASWRRYGTH LVIANIAMGA LLTQALESPW ADASVSERIL RLGLWIAAGF 480
  481 AVYLVSLLLA GLRPRHLLLS EKAIGNFDGV HLGHQTLVRR LTEQGHRLGL PVALVLFEPQ 540
  541 PREFFDQDQS PPRLMRLSEK LTRLAELPVD WVLLLPAHGY GRRSDEATWP ARRPCWAAPM 600
  601 PCADAWSTVT SSAVGWAFPP PTSSWGVKTF RCKAYLPLQC RAFQPNPGLA WPTSASGQPS 660
  661 AATARPCWKP ICSISPATCT GAGWKSICTT NFATRCANLA QREPEQIERW RTLDLYRKVR 720
  721 SRRAGRDKFI LHDGPPYANG EIHIGHAVNK ILKDFIVKSR TLSGFDAPYV PGWDCHGLPI 780
  781 ELMVEKKIGK AGHKVSPAEF RKACREYAAA QVDLQRREFI RLGVLGDWEN PYLTMDFRFE 840
  841 ADIVRALGRI AARGHLAKGA KPVHWCLDCG SALAEAEVEY ENKHSPAIDV RFAVVDEFGL 900
  901 MARFHTADGA LGEGPLSAVA LNPELDYVVV QRTDIKERLV LADALMKDVM LRCGAEGYRV 960
  961 IGYCKGAALE GVQLRHPFYD RIVPVILGDH VTLBAGTGAV HTAPGHGQED YAVGXRAQGA1020
 1021 RRIAARGAHR AQLPALLAPQ DPGDLPRHPP VVHRHGQGRA APPGPGGHRP GAMDTGLGPG1080
 1081 PHRGHGRQPP GLVHLAPAYL GRADPAVRPQ GNRRTASGHR PADRRNRKED RDRRHRRLVR1140
 1141 AGPGRTAGRG SGPLRQDRRH PGRLVRFRRH PPCSPGPEPR SRLPRRPLPE GSDQHRG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle