YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24899391
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLIVLLAVIK NKNLQSPVYF FICSLAISDM LGSLYKILEN ILIMFRNMGY LKPRGSLEST  60
   61 ADDIIDCMFV LSLLGSIFSL SVIAADRYIT IFHALQYHSI VTMRRTVITL TVIWMFCTGS 120
  121 GITMVIFSHH IPTVLTFTSL FPLMLVFILC LYIHMFLLAR SHARKISTLP RANMKGAMTL 180
  181 TILLGVFIFC WAPFVLHVLL MTFCPNNPYC VCYMSLFQVN GMLIMCNAVI DPFIYAFRSP 240
  241 EQ

Type	Start	End	Confidence
Cytoplasmic	1	17	0.90
Transmembrane Helix	18	38	0.91
Non-Cytoplasmic	39	66	0.91
Transmembrane Helix	67	89	0.85
Cytoplasmic	90	105	0.92
Transmembrane Helix	106	128	0.90
Non-Cytoplasmic	129	136	0.70
Transmembrane Helix	137	158	0.92
Cytoplasmic	159	176	0.94
Transmembrane Helix	177	200	0.89
Non-Cytoplasmic	201	215	0.80
Transmembrane Helix	216	235	0.86
Cytoplasmic	236	242	0.80