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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|23482060
Protein type: Transmembrane
Type Confidence: 0.62
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTKIDNVYNK IQNMETETVK SHLKNIETNN KLSETILDII KYIYGEITNE LNKTLEDFKN  60
   61 KEKGLSNKID EYAKENVQLN VYKSNILEIR KHYNDQINID NIKEKEAKQN YDQFKEHMKT 120
  121 IPPNENEISK TINEIKIMKD EFLSKVNKYN DFDKVYKEKV ESEHNKFTEL TNKIKTEVSD 180
  181 EEIKKYENKF NDSKSLINET KKSIEEEYQN INTLKKVDDY IKVCLNTNEL ITNCHNKQTT 240
  241 LKDKLNQNIK TIKETNSIDK IYTDKFENIL TDKKTELETK FTGLSLNNHE SNNKELLTYF 300
  301 YDLKANLGKN KENMLYKQFN EKEKAVEDIK KKNVDINKIV SNIEITIYTS IYNINEDTEN 360
  361 EIGKSIELLN TKVLEKVKAN VTNLNEIKEK LKDYDFQDFG KEKNIKYPDE NKIKNDIDTL 420
  421 NQKIDKSIET LTEIKKNSEN HIDEIKGQID KLKKVPNKTM FNEDPKEIEK KIENIVEKID 480
  481 KKKNIYKEID KLLNEISKIE NDKTSLEKLK NINLSYGKSL GNLFLQQIDE EKKKAEHTIK 540
  541 AMEAYIDDLD NIKKKSQEIE KEMNINMDIK MDIHKEMKAL NISHDDYKIY HTTSKNHEEK 600
  601 ISDIRKNSLK IIQDFSEESY INDIKKELEK NVLESQNNNT DINQYLSKIE NIYNILKLNK 660
  661 IKKIIDKVKE YTDEIEKNNK KINAELSNSE KIITQLKENS SLKECQSKIK STIDDNYVSE 720
  721 CIKNITNLKT YIVNEKNNIN TYFKNAEEYN QNVSLNFNNI EMADTKSQYI LNIKKNNGTN 780
  781 NTDYNIKELK EHKKKSNVYK DEAGKNTQEI KKNKELFEKY EQEVTVLLNK YYAVELKNKF 840
  841 DKTKNYSEQI IKEIKDAHNT FTSQADKSEK KMNEIKNEQI RIEDEVAKNN KSNKAILDIQ 900
  901 LSVEPFKIKF LKIKDLRTKS DDCLKETKDI ETKISNLSID TQETKLIENK NILNTLEKLL 960
  961 ESLKNQKKNI EDQKKELDEV NSKIKNIESN VNQHKKNYEI GIVEKINEIA KANKDQIEST1020
 1021 QKLIIPTIKN LISPFKANDL EGIDTNKNLG KYNTEMNNIY EEFIKSYDLI THYLETVSKE1080
 1081 PITYEQIKNK RITAQNELLT NIKNVNKAKS YLDDIEANEF DRIVTHFKNK LNDVNDKFTN1140
 1141 EYSKVNKGFD NISNSINNVK KSTDENLLLN ILNQTKEMYA NIVSKKYYSY KYEAENIFIN1200
 1201 IPKLANSLNI QIKSSSGIDL FKNINIAILP YLDSQKKDTL TFIPSPEKTS ETYTKISDSY1260
 1261 NTLLDILKRS QELQKKEQQA LNLIFENRLL HDKVQATNEL KDTLSDLKNK KEQILNKVKL1320
 1321 LLHKSNELNK LSCNSQNYDT ILESSKYDKI KEKSNNYEKE KENLGINFDV KAMEEQFNND1380
 1381 IKDIEKLENN YKHSEKDNYN FSEENNNILQ SKKKLKELTN AFNAEIKKIE DKIIEKNGLI1440
 1441 NKLIETRKDC MLFTYKTLVE TLKIKTTDYS KFITSATKFS KEFLKYIDAT SNSLNDDINT1500
 1501 LQTKYDLNQI NKHVASMVAD ATNDNNNLIE KEKEATKTIN NLTELFTIDS NKIDADGLHN1560
 1561 NKIQIIYFNS ELHKSIDSIK QLYKKMHAFK LLNIGHINKK YFDISKEFDN ILQLQESELT1620
 1621 ANLNDLKEIG QKISDKKKQF LHALSETPIP NFNTLKEIYH DIVKYKNQID EIENITNEEN1680
 1681 ENITLYMDII TKLMKKVQSI LNFVTTYEND SNIIKQHIQD NNENDVSKIK ESLETTIQSF1740
 1741 QKILNKLNEI KAQFYDNNNI NNVISTISQD VNDVKKHISK DLTIENELIQ IQKSLEDIKK1800
 1801 STYDIRSEQI TKYVNPIHDY VEQQTKKIQN NPNKDEIDDL IQEIVNYNKE SELKLPTIIN1860
 1861 NKDNVTPIIS RIDKVINLIK SEYNNNDNVS YNVAKKLEED ANNIIRDLDT SHNMLNDLIQ1920
 1921 KNFKIIDDLK NKKQEIENRN NLQTINREQE ITQTEHVNNT YHHDINDIND VIDINDINDT1980
 1981 NDINQNHQNS SSDKKDSSKT RNTGNTIRYA GAIAFGLVTF YVIIRIKEKK DKDEMEFDKS2040
 2041 KGFYDGGEST LFEREDEVIE IDMNEDLSFN 

YRC Informatics Platform - Version 3.0
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