YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23482056
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDLYILIRW LCKAIVSSLF GDVNIINPEN VPLYGSVIFV GNHNNQFIDA CVLVASIPRQ  60
   61 VKFIVAEKSM KRAVIGDLAR LAGCISVKRP EDLKFKGIGR IYWNTGDTKI KGINTRFKLD 120
  121 VQMGDKLMTQ NKIFSVTKIE SEIELILQDP ININCEDTVN GVPFKIVPKI NQSEVYNLVT 180
  181 HSLKNGDTIG IFPEGGSHDR TNLLPLKPGV AIMTLCALAD GIEDVSIIPV GLSYSKLYQL 240
  241 QGCVTIFFGN AIIASQDLCK DYNNNNRETI SKLLGKIEEG MRSCMLTSKN HETSRCIELC 300
  301 VSLYTPERMT ISKNKIYNNL QLFSEMFWKF GNSKEIENLC YELQCYEKLL EANKIKDDEV 360
  361 WMLKQSTSAA TLKFIEQICS LIFCTIFGMT FSLLWLPLVA ISVYLAENHR KTSLKNSLVK 420
  421 IQGGDVVASY KVLVLLVLLP TFNIIYGLLF SLYFYQSWLK RIAFTICSIC ILPICYYINI 480
  481 NYSVQIPTLL RQMKIHLKVI CGIINVWRDN ERELISMRHE LQLKVRNIVS KLGHKVSDSF 540
  541 LDQLHRNIPK FVINADTKRL IRGKDEWVPI LKRSQLEYRE EIL

Type	Start	End	Confidence
Non-Cytoplasmic	1	380	0.62
Transmembrane Helix	381	406	0.82
Cytoplasmic	407	426	0.60
Transmembrane Helix	427	450	0.85
Non-Cytoplasmic	451	461	0.46
Transmembrane Helix	462	483	0.87
Cytoplasmic	484	583	0.63