YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8099624
Protein type:	Transmembrane
Type Confidence:	0.47
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WLKLLAFSLA LLGPEVFVTG QGTTDDGANL TTPAPSTLGF GSNTTTSTEI ATPQTKPSCD  60
   61 EKFGNVTVRY IYDDSSKNFN ANLEGDKKPK CEHTDCEKEL KNLPECSQKN VTLSNGSCTP 120
  121 DKIINLDVPP GTHNFNLTNC TPDIEANTSI CLEWKIKNKF TCDIQKISYN YRCTPEMKTF 180
  181 PLDKRRKLWL HNLTVRTNYT CAAEVLYNNV ILLKQDRRVQ TDFGTPEMLP HVQCMNSTNS 240
  241 TTLVSWAEPA SKHHGYILCY KKTPSEKCEN LANDVNSFEV KNLRPYTEYT VSLFGYVIGR 300
  301 VQRNGPAKDC NFRTKAARPG KVNGMKTSRA SDNSINVTCN SPYEINGPEA RYILEVKSGG 360
  361 SLVKTFNQST CKFVVDNLYY STDYEFLVYF YNGEYLGDPE IKPQSTSYNS KALIIFLVFL 420
  421 IIVTSIAL

Type	Start	End	Confidence
Non-Cytoplasmic	1	411	0.87
Transmembrane Helix	412	427	0.59
Cytoplasmic	428	428	0.50