YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|691720
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.83
Transmembrane Helix	6	27	0.91
Cytoplasmic	28	81	0.92
Transmembrane Helix	82	101	0.84
Non-Cytoplasmic	102	117	0.86
Transmembrane Helix	118	140	0.93
Cytoplasmic	141	284	0.98
Transmembrane Helix	285	304	0.94
Non-Cytoplasmic	305	346	0.79
Transmembrane Helix	347	367	0.58
Cytoplasmic	368	411	0.77
Transmembrane Helix	412	434	0.88
Non-Cytoplasmic	435	484	0.86
Transmembrane Helix	485	506	0.86
Cytoplasmic	507	660	0.97
Transmembrane Helix	661	680	0.93
Non-Cytoplasmic	681	712	0.94
Transmembrane Helix	713	737	0.85
Cytoplasmic	738	758	0.89
Transmembrane Helix	759	782	0.78
Non-Cytoplasmic	783	841	0.85
Transmembrane Helix	842	862	0.79
Cytoplasmic	863	882	0.84
Transmembrane Helix	883	907	0.86
Non-Cytoplasmic	908	960	0.89
Transmembrane Helix	961	983	0.86
Cytoplasmic	984	991	0.77
Transmembrane Helix	992	1014	0.87
Non-Cytoplasmic	1015	1088	0.48
Transmembrane Helix	1089	1108	0.92
Cytoplasmic	1109	1182	0.65
Transmembrane Helix	1183	1206	0.87
Non-Cytoplasmic	1207	1869	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPLLHIALL VLFVIIIYAI IGLELFMGKM HKTCYNQEGI IDVPAKEDPS PCALETGHGR  60
   61 QCQNGTVCKP GWDGPKHGIT NFDNFAFAML TVFQCITMEG WTDVLYWVND AVGRDWPWIY 120
  121 FVTLIIIGSF FVLNLVLGVL SGEFSKEREK AKARGDFQKL REKQQLEEDL KGYLDWITQA 180
  181 EDIDPENEDE GMDEDKPRNR GAPAGLHDQK KGKFAWFSHS TETHVSMPTS ETESVNTDNV 240
  241 AGGDIEGENC GARLAHRISK SKFSRYWRRW NRFCRRKCRA AVKSNVFYWL VIFLVFLNTL 300
  301 TIASEHYNQP HWLTEDQDTA NKALLALFTA EMLLKMYSLG LQAYFVSLFN RFDCFIVCGG 360
  361 ILETILVETK IMSPLGISVL RCVRLLRIFK ITRYWNSLSN LVASLLNSVR SIASLLLLLF 420
  421 LFIIIFSLLG MQLFGGKFNF DEMQTRRSTF DNFPQSLLTV FQILTGEDWN SVMYDGIMAY 480
  481 GGPSFPGMLV CIYFIILFIC GNYILLNVFL AIAVDNLADA ESLTSAQKEE EEEKERKKLA 540
  541 RTASPEKKQE VMEKPAVEES KEEKIELKSI TGSGESPPTT KIHMDALQPS EPEDKSPHSN 600
  601 PDTAGEEDEE EPEMPVGPRP RPLSELHLKE KAVPMPEASA FFIFSPNNRF RLQCHRIVND 660
  661 TIFTNLILFF ILLSSISLAA EDPVQHTSFR NHMTAYGAFL HKGSFCRNYF NILDLLVLCV 720
  721 SLISFGIQSS AINVVKILRV LRVLRPLRAI NRAKGLKHVV QCVFVAIRTI GNIVIVTTLL 780
  781 QFMFACIGVQ LFKGKLYTCS DSSKQAEAEC KGNYITYKDG EVDHPIIQPR SWENSKFDFD 840
  841 NVLAAMMALF TVSTFEGWPE LLYRSIDSHT EDKGPIYNYR VEISIFFIIY IIIIAFFMMN 900
  901 IFVGFVIVTF QEQGEQEYKN CELDKNQRQC VEYALKARPL RRYIPKNQHQ YKVWYVVNST 960
  961 YFEYLMFVLI LLNTICLAMQ HYGQSCLFKI AMNILNMLFT GLFTVEMILK LIAFKPKGYF1020
 1021 SDPWNVFDFL IVIGSIIDVI LSETNSAEEN SRISITFFRL FRVMRLVKLL SRGEGIRTLL1080
 1081 WTFIKSFQAL PYVALLIVML FFIYAVIGMQ VFGKIALNDT TEINRNNNFQ TFPQAVLLLF1140
 1141 RCATGEAWQD IMLACMPGKK CAPESEPSNS TEGETPCGSS FAVFYFISFY MLCAFLIINL1200
 1201 FVAVIMDNFD YLTRDWSILG PHHLDEFKRI WAEYDPKAKG RIKHLDVVTL LRRIHPPLGF1260
 1261 GKLCPHRVAC KRLVSMNMPL NSDGTVMFNA TLFALVRTAL RIKTEGNLEQ ANEELRAIIK1320
 1321 KIWKRTSMKL LDQVVPPAGD DEVTVGKFYA TFLIQEYFRK FKERKEQGLV GKPSQRNALS1380
 1381 LQAGLRTLHD IGPEIRRAIS GDLTAEEELD KAMKEAVSAA SEDDIFRRAG GLFGNHVTYY1440
 1441 QSDSRGNFPQ TFATQRPLHI NKTGNNQADT ESPSHEKLVD STFTPSSYSS TGSNANINNA1500
 1501 NNTALGRFPH PAGYSSTVST VEGHGPPLSP AVRVQEAAWK LSSKRCHSRE SQGATVNQEI1560
 1561 FPDETRSVRM SEEAEYCSEP SLLSTDMFSY QEDEHRQLTC PEEDKREIQP SPKRSFLRSA1620
 1621 SLGRRASFHL ECLKRQKDQG GDISQKTALP LHLVHHQALA VAGLSPLLQR SHSPTTFPRP1680
 1681 CPTPPVTPAS RGSTLRPIPH LRLKGAESSE KLNSSFPSIH CSSWSEETTA CSGSSSMARR1740
 1741 ARPVSLTVPS QAGAPGRQFH GSASSLVEAV LISEGLGQFA QDPKFIEVTT QELADACDMT1800
 1801 IEEMENAADN ILSGGRQQSP NGTLLPLVNC RDPGQDRAVV PEDESCAYAL GRGRSEEALA1860
 1861 DSRSYVSNL