YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|218435010, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.97
Transmembrane Helix	20	39	0.96
Non-Cytoplasmic	40	57	0.92
Transmembrane Helix	58	79	0.92
Cytoplasmic	80	96	0.92
Transmembrane Helix	97	119	0.91
Non-Cytoplasmic	120	151	0.95
Transmembrane Helix	152	174	0.89
Cytoplasmic	175	194	0.91
Transmembrane Helix	195	216	0.91
Non-Cytoplasmic	217	235	0.88
Transmembrane Helix	236	257	0.92
Cytoplasmic	258	266	0.89
Transmembrane Helix	267	289	0.91
Non-Cytoplasmic	290	326	0.93
Transmembrane Helix	327	346	0.91
Cytoplasmic	347	354	0.87
Transmembrane Helix	355	374	0.91
Non-Cytoplasmic	375	408	0.88
Transmembrane Helix	409	431	0.85
Cytoplasmic	432	454	0.79
Transmembrane Helix	455	474	0.93
Non-Cytoplasmic	475	480	0.71
Transmembrane Helix	481	500	0.95
Cytoplasmic	501	667	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIMSENDTIP KKSTSQINKA VFFTSALLIF LLVAFAAVFP DVADKNFKLL QQQIFTNASW  60
   61 FYILAVALIL LSVTFLGLSR YGDIKLGPDH AQPDFSYHSW FAMLFSAGMG IGLMFFGVAE 120
  121 PVMHYLSPPV GTPETVAAAK EAMRLTFFHW GLHAWAIYAI VALILAFFSY RHGLPLTLRS 180
  181 ALYPIIGDRI YGPVGHAVDI FAVIGTVFGV ATSLGYGVLQ VNAGLNHLFG VPINETVQVI 240
  241 LIVVITGLAT ISVVSGLDKG IRILSELNLG LALLLLALVL CLGPTVLLLK SFVENTGGYL 300
  301 SELVSKTFNL YAYEPKSSNW LGGWTLLYWG WWLSWSPFVG MFIARVSRGR TIREFVTGVL 360
  361 FVPAGFTLMW MTVFGNSAIY LIMNQGATDL ANTVQQDVSL ALFNFLEHFP FSSVLSFIAM 420
  421 AMVIVFFVTS ADSGAMVVDT LASGGVANTP VWQRIFWASL MGIVAIALLL AGGLSALQTV 480
  481 TIASALPFSV ILLISIYGLL KALRRDLTKR ESLSMATIAP TAARNPIPWQ RRLRNIAYLP 540
  541 KRSLVKRFMD DVIQPAMTLV QEELNKQGTI SHISDAVDDR IRLEVDLGNE LNFIYEVRLR 600
  601 GYISPTFALA AMDNDEQQTE QHRYYRAEVY LKEGGQNYDV MGWNQEQLIN DILDQYEKHL 660
  661 HFLHLVR