YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3859877
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGPRTWYSL QAALVLSLLL KLSSSAFATT TSAGTHAVQE ESSAGGGAEI LPRLEELADN  60
   61 SELDLVKRLY DFGLGKRAYS YVSEYKRLPV YNFGLGKRSK MYGFGLGKRA GSDGRLYSFG 120
  121 LGKRDYDDYY GDDDEEDHQT SADEDIEDAD SVDLMDKRDR LYSFGLGKRA RPYSFGLGKR 180
  181 APSSAQRLYG FGLGKRALYS FGLGKRAGGR LYSFGLGKRP VNSGRQSGSR FNFGLGKRSD 240
  241 DFDIRELEGK FAEEDKRSPQ EHRFSFGLGK REVAPSELEA VKNEEKDSVS NQEKKNNTND 300
  301 AHIHNGERVK RSLHYPFGFG KQDSGFDLHS SSLSSEENDD IGPEEFARMV RRPFEYARQK 360
  361 QVPMYDFGIG KRSER

Type	Start	End	Confidence
Signal Peptide	1	28	0.98
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	375	0.99