YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AQPA_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKVVPLRFI TYDPLKDPSK MIYRRPISKP VKAFKGFFSE FLGTLYLVYF CGGSVCAAFA  60
   61 VAGDSAARAL LGGLIQGMAL AALIWAVSGV SGCNLNPAVT LANLLSGRVG LIDSLYYVAA 120
  121 QILGCIAGAG ILYGCLPNMY RIDLGVPHLA PGMNTGQAFL MEMMLTSILC LCVLGTSVFN 180
  181 VWDRRLNRIA PFAIGLALFI GVAIGFNFSG GALNPVRVLG PSIISGVWSH HWVYWLGPIV 240
  241 GAILAAFIYR CLLQERFDVI ERPGYIAPLI DPSTAVSSY

Type	Start	End	Confidence
Cytoplasmic	1	41	0.95
Transmembrane Helix	42	62	0.93
Non-Cytoplasmic	63	73	0.77
Transmembrane Helix	74	98	0.79
Cytoplasmic	99	114	0.78
Transmembrane Helix	115	136	0.93
Non-Cytoplasmic	137	157	0.93
Transmembrane Helix	158	182	0.88
Cytoplasmic	183	188	0.94
Transmembrane Helix	189	212	0.88
Non-Cytoplasmic	213	230	0.94
Transmembrane Helix	231	253	0.92
Cytoplasmic	254	279	0.99