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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|619642
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSITKTYNGD PTSLVPTQSV KESLRLIEDL KFFLATAPAN WQENQVIRRY YLNHDEGFVS  60
   61 CVYWNNLYFI TGTDIVRCIV YKFEHFGRKI IDRKKFEEGI FSDLRNLKCG ADAILEPPRS 120
  121 EFLEFLFKNS CLRTQKKQKV FFWFNVPHDK LMADALERDL KKEKMGQRPT TMAHREPALS 180
  181 FHYDESSSLY TQLGKHMETQ KRINDAATSS TSNTATTLTD TGVSSGLNNT TSGGGSDSAT 240
  241 STHNNNEAST KPSNGSEKSS PEYTTTARGR DEFGFLNEAT PSQYKANSDY EDDFPLDYIN 300
  301 QTTQNSEDYI TLDANYQAGS YANMIEDNYD SFLDATLFIP PSLGVPTGTA ATATTSNQVA 360
  361 FNDEYLIEQA QPIRTPLPPI SSSTISGLLQ PKSAAKFFSL QSANGGEEFF PAYQNDPSTA 420
  421 NAGFVPPISA KYATQFATRQ VATPTYIKAI PQTGAAAATG NGGQPQQYYD QATGNAFYPA 480
  481 EIPVSYNVVH PESEYWTNNS GAVATTAAAA APMYDASGFP IPINQSYMVM NEHEMVPYQY 540
  541 MNSNGAMIGM IPPHQQQQQQ QQQIAMGYQS MLRQQQQQQQ QQQQQQPSST MTKKKKQIHS 600
  601 FNNNKSLSSK GGGITKKSHD NNNHSKVKTS YGSLNDVVNS KVTKVINKEE VKQSQTXMNR 660
  661 YREKEKERKK LSKWDSNKFI LFVVIYALCL WTCFIMIYF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle